Hg_chrom1_TN10mRNA_1951
Organism: Heterodera glycines Gene Locus: chr1:16646273-16661542 Feature type: polypeptideProtein Sequence
Length: 766
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.486 | 1.639 | 0.973 | 0.945 | 0.87 | 1.707 | 1.057 | 0.522 | 1.015 | 0.953 | 1.048 | 1.382 | 1.052 | 1.155 | 0.666 | 1.007 | 1.327 | 0.89 | 0.201 | 1.075 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKDNTKITDQKDKKT,PSRRKKNGKKLDKKINSAASLVNTKKKEEEKLNKQKHQQKGKNNGRKMKEKNKS
|
2-50
|
0.958
|
40-61
|
0.935
|
— | — |
0.001
|
— | — |
0.170
|
0.063
|
0.111
|
0.291
|
0.430
|
0.160
|
0.287
|
0.009
|
0.345
|
0.642
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000370
|
5.000
|
3.000
|
Hsc_gene_9417.t1;Hsc_gene_9423.t1;Hsc_gene_9423.t2
|
— | — |
A1C4B8.1 Probable pectate lyase E [Aspergillus clavatus NRRL 1]
|
ADD82848.1 pectate lyase 1 [Heterodera avenae]
|
WP_062190760
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.968|GO:0003674_0.891|GO:0008152_0.803|GO:0043170_0.803|GO:0044238_0.779|GO:0009056_0.694|GO:0009057_0.694|GO:0003824_0.685|GO:0005975_0.675|GO:0005976_0.675|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.650|GO:0016835_0.650|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+307-514+|IPR011050+319-507+|IPR012334+324-543+
|
— |
PF03211+307-514+Pectate_lyase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
44-153;503-618;731-766
|
3.000
|
1-43;154-502;619-730
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
84253.750
|
6.662
|
1.000
|
21.802
|
8.747
|
50.653
|
49.347
|
11.227
|
10.574
|
55.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
559.161
|
89.301
|
472.275
|
313.675
|
138.105
|
72.958
|
112.538
|
75.652
|
2548.234
|
57.217
|
1124.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.173
|
1.676
|
-0.481
|
-1.215
|
-0.905
|
0.636
|
— |
0.715
|
5.350
|
-2.833
|
— | — | — |
No JSON data available for plots.