Hg_chrom1_TN10mRNA_1955
Organism: Heterodera glycines Gene Locus: chr1:16694602-16697720 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.439 | 1.975 | 0.6 | 1.139 | 1.494 | 1.089 | 0.281 | 2.123 | 1.572 | 1.211 | 1.715 | 2.22 | 1.31 | 0.454 | 0.963 | 1.146 | 0.619 | 0.286 | 0.726 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1878
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
5-25
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.412
|
0.270
|
0.005
|
0.673
|
0.207
|
0.132
|
0.210
|
0.012
|
0.195
|
0.440
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003114
|
1.000
|
2.000
|
Hsc_gene_9422.t1;Hsc_gene_9422.t2
|
Hsc_gene_9422.t1;Hsc_gene_9422.t2
|
— | — |
XP_018466934.2 RING-H2 finger protein ATL30 [Raphanus sativus];KAJ4901464.1 RING-H2 finger protein ATL30 [Raphanus sativus]
|
XP_027185747
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.912|GO:0110165_0.912|GO:0003674_0.832|GO:0050896_0.821|GO:0016020_0.816|GO:0006950_0.742|GO:0044419_0.704|GO:0009607_0.700|GO:0009605_0.699|GO:0043207_0.699|GO:0051707_0.697|GO:0006952_0.695|GO:0098542_0.692|GO:0003824_0.689|GO:0140096_0.688|GO:0009617_0.683|GO:0042742_0.678|GO:0016740_0.676|GO:0016746_0.669|GO:0016755_0.669|GO:0019787_0.669|GO:0004842_0.665|GO:0009987_0.557
|
IPR001841+146-192_147-191_147-192+|IPR013083+115-196+
|
SM00184+147-191+
|
PF13639+146-192+Ring_finger_domain
|
— |
PTHR45977+54-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
25149.900
|
9.147
|
12.500
|
32.547
|
13.679
|
57.075
|
42.925
|
20.283
|
12.264
|
37.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.