Hg_chrom1_TN10mRNA_1956
Organism: Heterodera glycines Gene Locus: chr1:16698405-16707279 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.354 | 1.48 | 1.308 | 0.954 | 1.13 | 1.454 | 0.988 | 0.553 | 1.199 | 0.878 | 1.132 | 1.871 | 1.153 | 0.958 | 0.96 | 0.948 | 1.02 | 0.922 | 0.213 | 0.936 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1877
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
extracellular
|
nucleus
|
PKTIPSRRKKNGKKLDKIIKSVAEEEKPKKQNDKNNGRKRKEKKKKSKMGKM
|
— | — | — | — | — |
0.661
|
0.032
|
1.000
|
— |
0.359
|
0.046
|
0.031
|
0.358
|
0.331
|
0.135
|
0.160
|
0.007
|
0.184
|
0.507
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000370
|
5.000
|
3.000
|
Hsc_gene_9417.t1;Hsc_gene_9423.t1;Hsc_gene_9423.t2
|
— | — |
A1C4B8.1 Probable pectate lyase E [Aspergillus clavatus NRRL 1]
|
ADD82848.1 pectate lyase 1 [Heterodera avenae]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.959|GO:0003674_0.892|GO:0008152_0.784|GO:0043170_0.784|GO:0044238_0.783|GO:0003824_0.705|GO:0009056_0.692|GO:0009057_0.691|GO:0005975_0.675|GO:0005976_0.674|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.654|GO:0016835_0.650|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+284-488+|IPR011050+301-475+|IPR012334+301-517+
|
— |
PF03211+284-488+Pectate_lyase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129;497-548;603-723
|
2.000
|
130-496;549-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
81087.370
|
5.253
|
-9.000
|
27.248
|
8.714
|
52.144
|
47.856
|
13.278
|
13.970
|
51.591
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3152.241
|
64.393
|
339.508
|
368.572
|
175.308
|
80.304
|
146.875
|
147.893
|
2194.929
|
11648.786
|
7597.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.168
|
2.381
|
0.229
|
-1.104
|
-1.112
|
0.880
|
0.768
|
— |
-2.514
|
-2.395
|
-5.666
|
— | — |