Hg_chrom1_TN10mRNA_196
Organism: Heterodera glycines Gene Locus: chr1:1438950-1444256 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.899 | 0.41 | 1.943 | 0.081 | 1.197 | 0.594 | 0.081 | 0.93 | 0.566 | 0.122 | 0.758 | 0.492 | 1.548 | 0.624 | 0.644 | 5.86 | 0.83 | 0.0 | 0.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_191
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.473
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
1-44
|
0.890
|
24-44
|
0.936
|
— | — |
0.230
|
— | — |
0.159
|
0.086
|
0.041
|
0.158
|
0.089
|
0.066
|
0.056
|
0.007
|
0.293
|
0.878
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001039
|
1.000
|
4.000
|
Hsc_gene_3883.t1;Hsc_gene_3885.t1;Hsc_gene_3909.t1;Hsc_gene_3910.t1
|
Hsc_gene_3883.t1;Hsc_gene_3885.t1;Hsc_gene_3909.t1;Hsc_gene_3910.t1
|
— | — |
KAI3410476.1 hypothetical protein GPALN_004577 [Globodera pallida]
|
No
|
-0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-155;365-458
|
3.000
|
1-36;156-364;459-621
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
63903.670
|
7.842
|
7.500
|
6.763
|
3.221
|
55.556
|
44.444
|
4.026
|
2.738
|
78.100
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
249.348
|
8.868
|
98.664
|
13.237
|
3.635
|
68.106
|
21.084
|
90.155
|
30.044
|
954.460
|
558.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.250
|
— |
-2.791
|
-1.897
|
4.243
|
-1.684
|
— |
-1.953
|
-5.156
|
— |
-7.896
|
— | — |
No JSON data available for plots.