Hg_chrom1_TN10mRNA_1962
Organism: Heterodera glycines Gene Locus: chr1:16736964-16740834 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.032 | 1.147 | 0.322 | 1.519 | 1.378 | 0.779 | 0.935 | 0.779 | 1.01 | 0.885 | 2.062 | 1.233 | 0.944 | 1.478 | 1.101 | 0.804 | 0.673 | 1.797 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1883
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRKL,RRRREIEDDESSSFLRRVR,RRREIEDDESSSFLRRVRQ,RREIEDDESSSFLRRVRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.727
|
0.244
|
0.072
|
0.547
|
0.052
|
0.054
|
0.085
|
0.017
|
0.039
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006455
|
1.000
|
1.000
|
Hsc_gene_9430.t1
|
Hsc_gene_9430.t1;Hsc_gene_9431.t1
|
— |
Q2TBK8.1 Snurportin-1 [Bos taurus]
|
KAF7630002.1 IBB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0005737|GO:0061015
|
GO:0005575_0.915|GO:0110165_0.908|GO:0003674_0.865|GO:0005622_0.859|GO:0016020_0.840|GO:0005488_0.823|GO:0043226_0.822|GO:0043229_0.806|GO:0043227_0.775|GO:0043231_0.755|GO:0005737_0.754|GO:0097159_0.718|GO:0003676_0.707|GO:0003723_0.676|GO:0005634_0.667|GO:0032991_0.658|GO:0071944_0.557|GO:0005886_0.548|GO:0008150_0.527
|
IPR017336+48-397+|IPR047857+113-342+
|
— |
PF21974+117-234_280-341+Snurportin1,_m3G_cap-binding_domain
|
— |
PTHR13403+48-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89;232-291;372-428
|
2.000
|
90-231;292-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
49078.960
|
5.415
|
-6.000
|
30.374
|
11.215
|
52.804
|
47.196
|
14.953
|
15.421
|
46.729
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1494.323
|
1219.258
|
983.819
|
904.411
|
1230.881
|
1205.360
|
1695.664
|
836.706
|
1064.552
|
2710.711
|
2005.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.540
|
-0.568
|
— |
0.413
|
— |
0.504
|
-0.634
|
1.163
|
— | — | — | — | — |
No JSON data available for plots.