Hg_chrom1_TN10mRNA_1964
Organism: Heterodera glycines Gene Locus: chr1:16741163-16746808 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.34 | 0.507 | 0.128 | 0.403 | 2.669 | 2.301 | 1.394 | 0.165 | 0.477 | 0.338 | 3.499 | 0.929 | 2.323 | 0.417 | 1.195 | 0.488 | 0.451 | 0.429 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1884
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.811
|
0.068
|
0.006
|
0.451
|
0.077
|
0.090
|
0.083
|
0.008
|
0.105
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001741
|
2.000
|
2.000
|
Hsc_gene_9432.t1;Hsc_gene_9432.t2
|
— | — |
Q9CYZ8.1 Single-stranded DNA-binding protein 2 [Mus musculus]
|
KAF7638537.1 LisH domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003697|GO:0005515
|
GO:0005575_0.746|GO:0008150_0.683|GO:0110165_0.635|GO:0009987_0.617|GO:0065007_0.616|GO:0050789_0.610|GO:0050794_0.592|GO:0032502_0.582|GO:0048856_0.582|GO:0003674_0.577|GO:0032501_0.566|GO:0005622_0.551|GO:0005488_0.550|GO:0007275_0.549|GO:0008152_0.546|GO:0019222_0.546|GO:0031323_0.546|GO:0044237_0.546|GO:0048731_0.542|GO:0043170_0.536|GO:0060255_0.536|GO:0009058_0.529|GO:0009059_0.529|GO:0010467_0.529|GO:0044249_0.529|GO:0009889_0.523|GO:0031326_0.523|GO:0010556_0.521|GO:0010468_0.514
|
IPR006594+27-59+|IPR008116+19-38_40-55+
|
— | — | — |
PTHR12610+17-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;98-538
|
1.000
|
24-97
|
8hib_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
54564.950
|
6.781
|
2.500
|
12.268
|
9.108
|
39.777
|
60.223
|
7.063
|
5.204
|
63.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1450.940
|
4307.827
|
1958.116
|
1429.190
|
1167.777
|
1461.526
|
858.881
|
1199.780
|
1454.218
|
613.538
|
973.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.366
|
-1.729
|
-0.346
|
-0.324
|
0.338
|
-0.759
|
-0.386
|
-0.343
|
— | — | — | — | — |
No JSON data available for plots.