Hg_chrom1_TN10mRNA_197
Organism: Heterodera glycines Gene Locus: chr1:1445781-1457097 Feature type: polypeptideProtein Sequence
Length: 2,684
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.3 | 0.684 | 0.051 | 2.099 | 0.955 | 0.408 | 0.913 | 0.853 | 1.082 | 1.66 | 3.594 | 0.424 | 2.157 | 0.57 | 1.56 | 0.629 | 0.536 | 0.143 | 0.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_192
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKELKKLRRTEEKKAKE,RRMSRESSENMAKMLKK,KKLRRTEEKKAKEFKKDLK,RKVITDKICEVQSPSRRFK,RRNKRSPPPSPKAKAGAHGSPKSPKQAKHGSPKSSLSKAKLGTSKSSPSMTKHGSPKSTPSNAKIGSPKSSLSNAKHGSPKSSPSKAKPGSPKSPSKAKPGSPKSPSKAKPGSPKSPYKAKPGSPKSPSKAKPGSPKSSPSKKGNVSP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.139
|
0.006
|
0.480
|
0.049
|
0.063
|
0.047
|
0.017
|
0.125
|
0.370
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002888
|
1.000
|
2.000
|
Hsc_gene_3886.t1;Hsc_gene_3886.t2
|
— | — | — | — |
WP_107619761
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1950;2231-2684
|
1.000
|
1951-2230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
298674.130
|
5.300
|
-45.500
|
31.930
|
4.024
|
55.999
|
44.001
|
15.574
|
16.356
|
47.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3899.074
|
11.934
|
51.945
|
848.620
|
1525.039
|
343.009
|
753.596
|
134.537
|
1163.463
|
14810.096
|
8961.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.892
|
6.015
|
4.140
|
0.815
|
-2.139
|
1.146
|
-1.474
|
2.635
|
-3.786
|
— |
-3.123
|
— | — |
No JSON data available for plots.