Hg_chrom1_TN10mRNA_1976
Organism: Heterodera glycines Gene Locus: chr1:16866921-16868723 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.168 | 0.89 | 0.609 | 0.495 | 0.638 | 0.859 | 0.854 | 1.675 | 1.063 | 0.97 | 0.652 | 0.563 | 1.462 | 1.564 | 1.66 | 0.957 | 1.333 | 0.797 | 2.208 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1895
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
32-52
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.079
|
0.069
|
0.004
|
0.104
|
0.410
|
0.169
|
0.942
|
0.005
|
0.125
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003116
|
2.000
|
1.000
|
Hsc_gene_9435.t1
|
— | — | — |
KAI6232944.1 Beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0008152_0.766|GO:0003674_0.755|GO:0009987_0.745|GO:0005575_0.691|GO:0110165_0.689|GO:0070085_0.677|GO:0044237_0.638|GO:0044238_0.638|GO:0009058_0.633|GO:0043170_0.622|GO:0003824_0.619|GO:0044249_0.615|GO:0019538_0.608|GO:0009059_0.606|GO:1901135_0.595|GO:0043412_0.580|GO:1901137_0.579|GO:0036211_0.578|GO:0009100_0.572|GO:0009101_0.570|GO:0006486_0.569|GO:0016740_0.569|GO:0043413_0.569|GO:0016757_0.556|GO:0016758_0.554|GO:0008194_0.548|GO:0016020_0.536
|
IPR027995+141-196+|IPR029044+129-209+
|
— |
PF13733+141-196+N-terminal_region_of_glycosyl_transferase_group_7
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
23252.520
|
10.641
|
14.500
|
22.967
|
13.397
|
44.976
|
55.024
|
15.789
|
7.177
|
54.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
5.118
|
1.080
|
2.067
|
2.506
|
1.858
|
16.392
|
12.068
|
10.562
|
1.382
|
3.904
|
2.823
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.168
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.