Hg_chrom1_TN10mRNA_1977
Organism: Heterodera glycines Gene Locus: chr1:16871059-16874034 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.401 | 1.008 | 0.499 | 1.084 | 0.803 | 0.66 | 1.928 | 0.857 | 1.042 | 0.767 | 0.709 | 1.941 | 1.205 | 0.984 | 0.895 | 0.948 | 0.913 | 2.224 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1896
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.806
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
32-52
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.094
|
0.046
|
0.002
|
0.147
|
0.610
|
0.202
|
0.899
|
0.004
|
0.104
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003120
|
2.000
|
1.000
|
Hsc_gene_9436.t1
|
Hsc_gene_3444.t1;Hsc_gene_9436.t1
|
— | — |
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.949|GO:0009987_0.787|GO:0008152_0.746|GO:0003674_0.737|GO:0009058_0.714|GO:0044238_0.708|GO:0003824_0.639|GO:0044237_0.632|GO:0044249_0.600|GO:0005575_0.583|GO:0110165_0.580|GO:0016740_0.563|GO:1901135_0.537|GO:0016757_0.527|GO:0016758_0.527|GO:1901137_0.519
|
IPR002659+178-365_187-362+
|
— |
PF01762+187-362+Galactosyltransferase
|
— |
PTHR11214+178-365+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;73-134
|
2.000
|
24-72;135-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
47084.950
|
6.400
|
-1.000
|
25.783
|
16.145
|
46.988
|
53.012
|
13.735
|
12.048
|
51.566
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
red
|
136.592
|
107.679
|
10.615
|
8.530
|
11.541
|
74.683
|
98.140
|
84.524
|
2.056
|
447.657
|
256.685
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.570
|
-3.798
|
— | — |
2.708
|
0.405
|
— | — |
-6.920
|
— | — | — | — |
No JSON data available for plots.