Hg_chrom1_TN10mRNA_1979
Organism: Heterodera glycines Gene Locus: chr1:16888682-16893448 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.303 | 0.639 | 0.269 | 0.583 | 0.352 | 0.813 | 0.931 | 0.529 | 1.691 | 1.857 | 0.288 | 1.99 | 1.938 | 1.098 | 0.733 | 1.359 | 0.797 | 1.025 | 1.464 | 0.808 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKAKPKAAPAR
|
38-58
|
0.984
|
— | — | — | — |
0.000
|
— | — |
0.073
|
0.085
|
0.010
|
0.132
|
0.301
|
0.541
|
0.352
|
0.009
|
0.696
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000515
|
3.000
|
4.000
|
Hsc_gene_9442.t1;Hsc_gene_9442.t2;Hsc_gene_9443.t1;Hsc_gene_9443.t2
|
Hsc_gene_9443.t1
|
— | — |
KAF7639383.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.912|GO:0110165_0.904|GO:0008150_0.722|GO:0016020_0.705|GO:0071944_0.701|GO:0005886_0.685|GO:0006810_0.629|GO:0051179_0.629|GO:0051234_0.629|GO:0005622_0.579|GO:0005737_0.579|GO:0043226_0.547|GO:0043227_0.531|GO:0005773_0.525|GO:0043229_0.525|GO:0043231_0.525|GO:0071705_0.511
|
IPR011701+52-396+|IPR036259+31-458_35-234_260-467+|IPR050930+42-463+
|
— |
PF07690+52-396+Major_Facilitator_Superfamily
|
— |
PTHR23506+42-463+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
50938.310
|
9.147
|
11.500
|
10.148
|
12.685
|
30.444
|
69.556
|
6.554
|
3.594
|
51.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
244.536
|
31.400
|
60.586
|
206.213
|
513.354
|
261.970
|
258.396
|
283.534
|
9.640
|
456.820
|
265.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
2.577
|
1.876
|
1.285
|
-0.955
|
— | — | — |
-5.685
|
4.631
|
— | — | — |
No JSON data available for plots.