Hg_chrom1_TN10mRNA_198
Organism: Heterodera glycines Gene Locus: chr1:1457941-1465038 Feature type: polypeptideProtein Sequence
Length: 759
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.414 | 1.593 | 1.126 | 0.727 | 0.9 | 1.081 | 0.8 | 2.108 | 1.552 | 0.944 | 0.798 | 2.093 | 1.903 | 1.14 | 0.995 | 0.734 | 0.756 | 0.858 | 1.622 | 0.814 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.064
|
0.005
|
0.160
|
0.249
|
0.147
|
0.176
|
0.088
|
0.755
|
0.324
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005601
|
1.000
|
1.000
|
Hsc_gene_3888.t1
|
Hsc_gene_3888.t1
|
— |
P14133.1 L-ascorbate oxidase [Cucumis sativus]
|
KAI1724017.1 multicopper oxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507|GO:0016491
|
GO:0008150_0.806|GO:0005575_0.602|GO:0110165_0.602|GO:0003674_0.542
|
IPR001117+301-402+|IPR002355+673-684+|IPR008972+79-226_113-227_246-448_249-402_510-715_565-714+|IPR011706+560-691+|IPR011707+118-225+|IPR045087+120-694+
|
— |
PF00394+301-402+Multicopper_oxidase|PF07731+560-691+Multicopper_oxidase|PF07732+118-225+Multicopper_oxidase
|
— |
PTHR11709+120-694+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-759
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
87691.980
|
6.763
|
5.000
|
25.955
|
15.942
|
46.772
|
53.228
|
14.361
|
11.594
|
46.772
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1467.088
|
91.516
|
511.099
|
485.561
|
424.421
|
640.595
|
369.794
|
210.637
|
955.165
|
4677.029
|
3081.945
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.254
|
2.270
|
— |
-0.227
|
0.609
|
-0.789
|
-1.711
|
0.949
|
— | — | — | — | — |
No JSON data available for plots.