SCN Proteipedia

Hg_chrom1_TN10mRNA_1980

Organism: Heterodera glycines Gene Locus: chr1:16895110-16901002 Feature type: polypeptide

Protein Sequence

Length: 431

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.214	0.647	0.38	0.8	0.425	0.952	0.856	0.812	1.392	1.819	0.211	1.774	1.998	1.115	0.616	1.16	0.913	1.266	2.142	0.682	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1899	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.911

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	—	85-105	0.998	80-102	0.992	—	—	0.000	—	—	0.079	0.112	0.005	0.121	0.321	0.623	0.459	0.011	0.519	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000515	3.000	4.000	Hsc_gene_9442.t1;Hsc_gene_9442.t2;Hsc_gene_9443.t1;Hsc_gene_9443.t2	—	—	—	KAF7639383.1 MFS domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0022857\|GO:0055085	GO:0008150_0.946\|GO:0005575_0.903\|GO:0110165_0.896\|GO:0009987_0.889\|GO:0003674_0.857\|GO:0006810_0.850\|GO:0051179_0.850\|GO:0051234_0.850\|GO:0055085_0.820\|GO:0005215_0.772\|GO:0022857_0.772\|GO:0006811_0.744\|GO:0034220_0.737\|GO:0098660_0.737\|GO:0071705_0.734\|GO:0006812_0.719\|GO:0098655_0.717\|GO:0098662_0.717\|GO:0015075_0.704\|GO:0015318_0.697\|GO:0051641_0.696\|GO:0008324_0.690\|GO:0022804_0.687\|GO:0051649_0.686\|GO:0015695_0.684\|GO:0015850_0.684\|GO:0022890_0.684\|GO:0098657_0.682\|GO:0015291_0.681\|GO:0022853_0.679\|GO:1902600_0.677\|GO:0006836_0.676\|GO:0015844_0.675\|GO:0000296_0.670\|GO:0001504_0.670\|GO:0006837_0.670\|GO:0015846_0.670\|GO:0015848_0.670\|GO:0030054_0.670\|GO:0045202_0.670\|GO:0051610_0.670\|GO:0098793_0.670\|GO:0098810_0.670\|GO:1902047_0.670\|GO:0015078_0.658\|GO:0015297_0.657\|GO:0008504_0.650\|GO:0015203_0.650\|GO:0015311_0.650\|GO:0015312_0.650	IPR011701+136-368+\|IPR020846+214-431+\|IPR036259+17-423_134-412+\|IPR050930+21-421+	—	PF07690+136-368+Major_Facilitator_Superfamily	—	PTHR23506+21-421+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-4	1.000	5-431	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.735	46875.230	7.036	2.500	10.673	13.921	30.858	69.142	6.032	4.640	52.668

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	235.318	208.139	359.623	339.768	282.780	288.537	322.028	295.736	225.732	73.989	139.022

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.559	0.571	—	-0.297	—	—	—	0.265	—	—	3.279	—	—

No JSON data available for plots.

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