Hg_chrom1_TN10mRNA_1981
Organism: Heterodera glycines Gene Locus: chr1:16902788-16906736 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 0.608 | 0.238 | 0.676 | 0.508 | 0.894 | 0.908 | 0.436 | 1.549 | 1.973 | 0.198 | 1.666 | 1.997 | 1.006 | 0.8 | 1.338 | 0.679 | 1.32 | 1.508 | 0.833 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1900
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.681
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
24-46
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.075
|
0.110
|
0.007
|
0.121
|
0.278
|
0.728
|
0.469
|
0.014
|
0.570
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000515
|
3.000
|
4.000
|
Hsc_gene_9442.t1;Hsc_gene_9442.t2;Hsc_gene_9443.t1;Hsc_gene_9443.t2
|
Hsc_gene_9443.t1;Hsc_gene_9443.t2
|
— | — |
KAF7639383.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.920|GO:0110165_0.909|GO:0008150_0.795|GO:0071944_0.772|GO:0005886_0.763|GO:0016020_0.763|GO:0006810_0.724|GO:0051179_0.724|GO:0051234_0.724|GO:0005622_0.657|GO:0005737_0.657|GO:0005773_0.607|GO:0043226_0.607|GO:0043227_0.607|GO:0043229_0.607|GO:0043231_0.607|GO:0071705_0.593|GO:0009987_0.584|GO:0012505_0.579|GO:0031090_0.510
|
IPR011701+37-380+|IPR036259+1-449_24-443+|IPR050930+30-451+
|
— |
PF07690+37-380+Major_Facilitator_Superfamily
|
— |
PTHR23506+30-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
49782.960
|
8.211
|
6.000
|
10.458
|
12.854
|
30.065
|
69.935
|
6.100
|
4.357
|
50.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
262.744
|
163.407
|
205.044
|
89.897
|
115.850
|
279.892
|
561.259
|
288.893
|
39.211
|
481.007
|
291.666
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.000
|
-1.081
|
0.334
|
1.288
|
1.014
|
— |
1.102
|
-3.739
|
— | — | — | — |
No JSON data available for plots.