SCN Proteipedia

Hg_chrom1_TN10mRNA_1982

Organism: Heterodera glycines Gene Locus: chr1:16908834-16935112 Feature type: polypeptide

Protein Sequence

Length: 1,781

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.129	1.319	1.082	0.755	0.898	1.526	0.815	2.077	0.524	1.138	0.655	1.321	0.577	0.896	1.26	1.612	0.939	0.774	0.475	0.33	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1901	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRVKEMEKRRK,RRRKLKTEWAKQRKQ,RKQLDVCVEELRRAKQ,KKDQHFLANEERRQQR,KKCLGSVQLWCGEKTAKR	—	—	—	—	—	—	0.000	—	—	0.222	0.177	0.028	0.643	0.141	0.220	0.246	0.061	0.481	0.106

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003121	2.000	1.000	Hsc_gene_9444.t1	Hsc_gene_9444.t1;Hsc_gene_9446.t1	—	Q3TBD2.2 Rho GTPase-activating protein 45 [Mus musculus]	KAI1720094.1 rhoGAP domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007165	GO:0008150_0.899\|GO:0009987_0.859\|GO:0005575_0.841\|GO:0110165_0.834\|GO:0065007_0.800\|GO:0050789_0.791\|GO:0050794_0.782\|GO:0003674_0.727\|GO:0005622_0.687\|GO:0005488_0.682\|GO:0050896_0.601\|GO:0005515_0.592\|GO:0023052_0.555\|GO:0007154_0.554\|GO:0051716_0.546\|GO:0016020_0.528\|GO:0032502_0.513\|GO:0048856_0.513	IPR000198+1071-1269_1082-1266_1085-1239+\|IPR002219+1003-1049_1004-1049_1005-1049+\|IPR008936+996-1275_1067-1269+\|IPR027267+505-817_515-815+\|IPR046349+1002-1051+\|IPR051025+514-1530+	SM00109+1003-1049+\|SM00324+1082-1266+	PF00620+1085-1239+RhoGAP_domain\|PF22699+515-763+GEM-interacting_protein-like,_FCH_domain	—	PTHR15228+514-1530+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-47;178-372;414-505;604-745;823-1007;1284-1781	5.000	48-177;373-413;506-603;746-822;1008-1283	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.827	192825.580	7.045	22.000	25.997	7.973	54.632	45.368	14.655	11.342	57.159

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	2698.220	2997.310	2549.795	1760.586	1303.473	3532.856	1442.322	2432.619	1094.817	4976.490	3312.916

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.461	-0.905	-0.427	-0.465	1.453	-1.284	-0.638	-0.615	-2.297	—	—	—	—

No JSON data available for plots.

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