Hg_chrom1_TN10mRNA_1983
Organism: Heterodera glycines Gene Locus: chr1:16908834-16949634 Feature type: polypeptideProtein Sequence
Length: 1,655
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.251 | 1.237 | 1.022 | 0.583 | 0.886 | 1.425 | 0.705 | 2.085 | 0.537 | 1.29 | 0.677 | 1.351 | 0.604 | 0.86 | 1.319 | 1.511 | 1.02 | 0.815 | 0.465 | 0.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRVKEMEKRRK,RRRKLKTEWAKQRKQ,RKQLDVCVEELRRAKQ,KKDQHFLANEERRQQR,KKCLGSVQLWCGEKTAKR
|
93-113
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.226
|
0.205
|
0.028
|
0.648
|
0.124
|
0.258
|
0.238
|
0.072
|
0.496
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003121
|
2.000
|
1.000
|
Hsc_gene_9444.t1
|
Hsc_gene_9444.t1;Hsc_gene_9446.t1;Hsc_gene_9448.t1
|
— |
Q3TBD2.2 Rho GTPase-activating protein 45 [Mus musculus]
|
KAI1720094.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.899|GO:0009987_0.858|GO:0005575_0.838|GO:0110165_0.831|GO:0065007_0.797|GO:0050789_0.785|GO:0050794_0.777|GO:0003674_0.726|GO:0005622_0.692|GO:0005488_0.682|GO:0050896_0.591|GO:0005515_0.588|GO:0023052_0.551|GO:0007154_0.548|GO:0051716_0.543|GO:0016020_0.528|GO:0032502_0.505|GO:0048856_0.505
|
IPR000198+945-1143_956-1140_959-1113+|IPR002219+877-923_878-923_879-923+|IPR008936+870-1149_941-1143+|IPR027267+379-691_389-689+|IPR046349+876-925+|IPR051025+388-1420+
|
SM00109+877-923+|SM00324+956-1140+
|
PF00620+959-1113+RhoGAP_domain|PF22699+389-637+GEM-interacting_protein-like,_FCH_domain
|
— |
PTHR15228+388-1420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-229;288-379;478-619;697-881;1158-1655
|
5.000
|
1-170;230-287;380-477;620-696;882-1157
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
179690.570
|
7.675
|
34.500
|
26.042
|
7.976
|
53.716
|
46.284
|
15.106
|
10.937
|
55.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2698.220
|
2997.310
|
2549.795
|
1760.586
|
1303.473
|
3532.856
|
1442.322
|
2432.619
|
1094.817
|
4976.490
|
3312.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.461
|
-0.905
|
-0.427
|
-0.465
|
1.453
|
-1.284
|
-0.638
|
-0.615
|
-2.297
|
— | — | — | — |
No JSON data available for plots.