Hg_chrom1_TN10mRNA_1985
Organism: Heterodera glycines Gene Locus: chr1:16966892-16981206 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.536 | 0.911 | 0.964 | 0.953 | 0.73 | 0.886 | 0.768 | 1.037 | 1.843 | 1.183 | 0.873 | 0.813 | 1.472 | 1.152 | 1.928 | 1.086 | 0.831 | 0.663 | 1.95 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1903
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRTLELMLTLKTKRN,KRRSFRVAKKTNKRILKK
|
30-50
|
0.972
|
18-45
|
0.987
|
— | — |
0.000
|
— | — |
0.207
|
0.396
|
0.025
|
0.730
|
0.135
|
0.069
|
0.168
|
0.025
|
0.149
|
0.412
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006460
|
2.000
|
0.000
|
0.000
|
— | — |
P34308.4 Calpain clp-1 [Caenorhabditis elegans]
|
EPB73119.1 calpain family cysteine protease [Ancylostoma ceylanicum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.793|GO:0005575_0.716|GO:0110165_0.716|GO:0003674_0.669|GO:0009987_0.617|GO:0005622_0.572|GO:0016020_0.517
|
IPR001300+114-411_215-398_216-398+|IPR022684+204-229_235-258_260-287+|IPR038765+215-398+|IPR050420+216-399+
|
SM00230+114-411+
|
PF00648+215-398+Calpain_family_cysteine_protease
|
— |
PTHR10183+216-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
433-434
|
1.000
|
1-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
49974.720
|
10.193
|
28.500
|
26.959
|
12.442
|
47.005
|
52.995
|
17.281
|
9.677
|
46.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
250.061
|
3.989
|
10.219
|
6.169
|
4.502
|
4.968
|
18.934
|
8.797
|
12.564
|
1063.002
|
612.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.137
|
— | — | — | — |
1.933
|
— |
1.240
|
-6.518
|
— |
-7.349
|
— | — |
No JSON data available for plots.