Hg_chrom1_TN10mRNA_1991
Organism: Heterodera glycines Gene Locus: chr1:17022274-17035958 Feature type: polypeptideProtein Sequence
Length: 1,520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 0.857 | 1.089 | 0.658 | 0.833 | 0.978 | 0.783 | 1.513 | 1.345 | 1.307 | 0.488 | 1.393 | 1.553 | 1.05 | 1.262 | 0.902 | 0.971 | 0.947 | 1.012 | 0.909 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1909
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRRK,RHRR,RRNRLPFPSSARELRERHR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.096
|
0.112
|
0.008
|
0.118
|
0.350
|
0.639
|
0.574
|
0.013
|
0.677
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003123
|
2.000
|
1.000
|
Hsc_gene_14095.t1
|
Hsc_gene_14095.t1
|
— |
Q09614.2 Protein patched homolog 1 [Caenorhabditis elegans]
|
KAH7727449.1 Protein PTC-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.947|GO:0005575_0.773|GO:0110165_0.772|GO:0071944_0.742|GO:0005886_0.730|GO:0016020_0.730|GO:0032501_0.675|GO:0009987_0.661|GO:0065007_0.558|GO:0050789_0.528|GO:0003674_0.517|GO:0050794_0.504
|
IPR000731+686-848+|IPR003392+669-1129_1275-1473+
|
— |
PF02460+669-1129_1275-1473+Patched_family
|
G3DSA:1.20.1640.10:FF:000031+647-859+PaTChed_family
|
PTHR46022+66-1508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
886-954;1505-1520
|
2.000
|
1-885;955-1504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
169941.180
|
6.470
|
-1.000
|
23.421
|
13.026
|
43.158
|
56.842
|
12.434
|
10.987
|
50.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1909.889
|
3241.682
|
1984.128
|
1419.479
|
1410.382
|
1341.876
|
2039.397
|
2490.474
|
1733.908
|
1832.551
|
1790.275
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.937
|
-1.329
|
-0.376
|
— | — |
0.613
|
0.795
|
— | — | — | — | — | — |
No JSON data available for plots.