Hg_chrom1_TN10mRNA_2
Organism: Heterodera glycines Gene Locus: chr1:2757-31626 Feature type: polypeptideProtein Sequence
Length: 2,305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.969 | 1.104 | 0.643 | 1.215 | 1.135 | 0.785 | 0.716 | 0.819 | 0.885 | 0.914 | 0.995 | 0.663 | 1.46 | 1.514 | 1.01 | 0.989 | 1.012 | 1.168 | 0.523 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRVRTASGGGRRRCD,KRGRQMARTSESKKRFN,KRMANLTAQSEDERRVRT,RKMEQHQKRLEFIKRKKMN
|
26-46
|
0.994
|
1-58
|
0.988
|
— | — |
0.000
|
— | — |
0.455
|
0.091
|
0.018
|
0.701
|
0.055
|
0.025
|
0.029
|
0.012
|
0.396
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002851
|
1.000
|
2.000
|
Hsc_gene_11381.t1;Hsc_gene_26032.t1
|
Hsc_gene_26044.t1
|
— |
Q23551.3 Twitchin [Caenorhabditis elegans]
|
KAI3421286.1 IG-like protein, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.881|GO:0110165_0.869|GO:0008150_0.795|GO:0005622_0.789|GO:0003674_0.738|GO:0043226_0.690|GO:0009987_0.685|GO:0043229_0.665|GO:0005488_0.658|GO:0005737_0.654|GO:0032501_0.588|GO:0005515_0.576|GO:0043228_0.553|GO:0043232_0.553|GO:0065007_0.535|GO:0050789_0.523|GO:0032502_0.517|GO:0048856_0.517
|
IPR003599+436-522_665-749_760-842_1057-1141_1958-2043+|IPR003961+326-410_328-425_338-416_340-414_944-1032_944-1044_946-1038_946-1047_1144-1226_1144-1233_1147-1240_1150-1228_1270-1343_1270-1347_1271-1349_1272-1357_1360-1458_1361-1444_1361-1447_1364-1448_1838-1932_1838-1935_1840-1947_1850-1938+|IPR007110+244-298_428-522_665-745_749-840+|IPR013087+208-230_208-235_210-230_1715-1737_1715-1742_1717-1737+|IPR013098+437-521_673-737_1056-1140_1960-2042+|IPR013783+260-320_321-424_425-536_666-748_749-843_939-1046_1051-1142_1143-1238_1263-1356_1357-1459_1837-1952_1953-2058+|IPR036116+324-1044_1130-1241_1269-1450_1826-1950+|IPR036179+271-312_436-530_675-752_753-834_1054-1150_1960-2051+
|
SM00060+326-410_944-1032_1144-1226_1270-1343_1361-1444_1838-1932+|SM00355+208-230_1715-1737+|SM00409+436-522_665-749_760-842_1057-1141_1958-2043+
|
PF00041+338-416_946-1038_1150-1228_1271-1349_1364-1448_1850-1938+Fibronectin_type_III_domain|PF07679+437-521_673-737_1056-1140_1960-2042+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000031+428-523_1950-2044+Myosin-binding_protein_C,_slow_type|G3DSA:2.60.40.10:FF:000135+943-1046+Titin_a|G3DSA:2.60.40.10:FF:000160+1143-1240+Titin_a
|
PTHR14340+676-877+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
224-346;518-583;845-963;1101-1145;1469-1860;2040-2305
|
6.000
|
1-223;347-517;584-844;964-1100;1146-1468;1861-2039
|
8g4l_n
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
253557.270
|
7.533
|
18.500
|
28.243
|
7.115
|
49.935
|
50.065
|
14.881
|
13.362
|
55.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
7499.779
|
9389.910
|
19398.945
|
8777.972
|
7587.659
|
9911.903
|
6601.742
|
8931.203
|
3884.743
|
3423.224
|
3621.018
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
-0.234
|
-1.037
|
-0.242
|
0.400
|
-0.577
|
-0.255
|
-0.294
|
— | — | — |
4.186
|
— |
No JSON data available for plots.