Hg_chrom1_TN10mRNA_2005
Organism: Heterodera glycines Gene Locus: chr1:17084387-17085981 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 0.808 | 1.193 | 0.666 | 1.287 | 1.287 | 0.368 | 0.579 | 0.944 | 1.878 | 1.463 | 1.59 | 0.858 | 0.446 | 1.024 | 0.993 | 1.266 | 0.995 | 0.0 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1923
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RKLVIQAAIVRIMKMRKS,RKLKVDLVRAMSSARETKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.700
|
0.188
|
0.017
|
0.551
|
0.157
|
0.090
|
0.191
|
0.018
|
0.032
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000514
|
6.000
|
1.000
|
Hsc_gene_12951.t1
|
Hsc_gene_12951.t1;Hsc_gene_21748.t1;Hsc_gene_21763.t1
|
— |
Q13616.2 Cullin-1 [Homo sapiens]
|
KAI3421893.1 Cullin-1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0031461|GO:0031625
|
GO:0008150_0.894|GO:0005575_0.856|GO:0110165_0.738|GO:0005622_0.704|GO:0009987_0.697|GO:0016020_0.589|GO:0032991_0.588|GO:0043226_0.572|GO:0043229_0.562|GO:0065007_0.556|GO:0008152_0.547|GO:0043170_0.547|GO:0044238_0.541|GO:0050789_0.541|GO:0005737_0.540|GO:0043227_0.521|GO:0019538_0.514|GO:0050896_0.514|GO:0043231_0.506|GO:0050794_0.501
|
IPR016157+232-259+|IPR019559+186-253_189-251+|IPR036317+70-165+|IPR036388+170-259+|IPR036390+173-259+|IPR045093+71-250+
|
SM00884+186-253+
|
PF10557+189-251+Cullin_protein_neddylation_domain
|
G3DSA:1.10.10.10:FF:000014+169-259+Cullin_1
|
PTHR11932+71-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-259
|
8caf_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
29326.900
|
7.634
|
2.500
|
30.116
|
6.564
|
53.282
|
46.718
|
15.830
|
14.286
|
45.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
226.585
|
30.956
|
36.053
|
67.251
|
124.517
|
558.256
|
100.751
|
592.177
|
0.000
|
425.074
|
242.899
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.982
|
1.008
|
0.858
|
2.178
|
-2.459
|
— |
-2.407
|
-9.525
|
6.928
|
— | — | — |
No JSON data available for plots.