Hg_chrom1_TN10mRNA_2008
Organism: Heterodera glycines Gene Locus: chr1:17098758-17099800 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.55 | 0.987 | 0.771 | 0.0 | 0.707 | 1.554 | 1.01 | 0.606 | 0.808 | 1.474 | 0.918 | 0.713 | 1.347 | 0.583 | 1.113 | 0.866 | 0.795 | 1.102 | 0.932 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1926
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.745
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
peroxisome
|
— | — |
42-62
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.164
|
0.515
|
0.026
|
0.110
|
0.350
|
0.421
|
0.309
|
0.530
|
0.195
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006464
|
1.000
|
1.000
|
Hsc_gene_1325.t2
|
Hsc_gene_1325.t1;Hsc_gene_1325.t2;Hsc_gene_22491.t1;Hsc_gene_7114.t1
|
— |
Q96GQ5.2 RUS family member 1 [Homo sapiens]
|
XP_043942562.1 RUS family member 1 [Protopterus annectens];XP_043942563.1 RUS family member 1 [Protopterus annectens];XP_043942564.1 RUS family member 1 [Protopterus annectens]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.897|GO:0110165_0.893|GO:0016020_0.819|GO:0008150_0.575|GO:0005622_0.535|GO:0005737_0.527
|
IPR006968+38-147_53-147+
|
— |
PF04884+53-147+Vitamin_B6_photo-protection_and_homoeostasis
|
— |
PTHR12770+38-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
17993.550
|
9.992
|
6.000
|
21.212
|
10.909
|
42.424
|
57.576
|
12.727
|
8.485
|
51.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
48.116
|
59.149
|
43.975
|
50.136
|
57.549
|
72.799
|
50.702
|
27.842
|
53.105
|
34.873
|
42.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.655
|
-0.376
|
— | — | — |
-0.512
|
-1.494
|
1.008
|
— | — | — | — | — |
No JSON data available for plots.