Hg_chrom1_TN10mRNA_2011
Organism: Heterodera glycines Gene Locus: chr1:17126694-17133479 Feature type: polypeptideProtein Sequence
Length: 470
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 0.643 | 1.122 | 0.514 | 1.206 | 1.037 | 0.507 | 0.957 | 0.567 | 1.581 | 1.096 | 1.877 | 1.773 | 0.614 | 0.738 | 0.912 | 1.081 | 1.225 | 1.637 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1929
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.188
|
0.062
|
0.729
|
0.176
|
0.116
|
0.106
|
0.009
|
0.147
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001745
|
4.000
|
0.000
|
0.000
|
— | — |
Q4TT88.1 Puromycin-sensitive aminopeptidase [Caenorhabditis elegans]
|
AAX68678.1 aminopeptidase [Heterodera glycines]
|
No
|
-0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008237|GO:0008270
|
GO:0005575_0.840|GO:0110165_0.834|GO:0008150_0.806|GO:0003674_0.773|GO:0005622_0.678|GO:0016020_0.673|GO:0003824_0.656|GO:0005737_0.608|GO:0016787_0.591|GO:0043226_0.590|GO:0140096_0.578|GO:0071944_0.572|GO:0008233_0.566|GO:0005886_0.540|GO:0043229_0.538|GO:0009987_0.503|GO:0008152_0.501
|
IPR001930+142-157_250-260_275-290+|IPR014782+218-292+|IPR024571+362-452+|IPR027268+193-290+|IPR034016+20-292+|IPR042097+2-192_7-187+|IPR045357+17-182+|IPR050344+292-451+
|
— |
PF01433+218-292+Peptidase_family_M1_domain|PF11838+362-452+ERAP1-like_C-terminal_domain|PF17900+17-182+Peptidase_M1_N-terminal_domain
|
— |
PTHR11533+292-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
53280.290
|
5.252
|
-7.500
|
26.170
|
12.766
|
45.957
|
54.043
|
12.766
|
13.404
|
47.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkorange
|
1016.620
|
1080.451
|
944.199
|
1544.613
|
1619.912
|
1418.335
|
1206.753
|
946.010
|
93.279
|
1092.649
|
664.348
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.424
|
0.379
|
0.819
|
— |
-0.177
|
-0.223
|
-0.689
|
0.493
|
— |
4.252
|
— | — | — |
No JSON data available for plots.