Hg_chrom1_TN10mRNA_2021
Organism: Heterodera glycines Gene Locus: chr1:17197368-17210762 Feature type: polypeptideProtein Sequence
Length: 952
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 0.904 | 0.974 | 0.616 | 0.945 | 1.508 | 0.838 | 1.471 | 0.724 | 1.221 | 0.637 | 1.607 | 0.759 | 1.03 | 1.286 | 1.441 | 1.154 | 0.859 | 0.727 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1939
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKL,RKRK,RPRR,RRATLSSGCNDGGKAARR
|
49-88
|
0.882
|
— | — | — | — |
0.000
|
— | — |
0.294
|
0.284
|
0.042
|
0.547
|
0.145
|
0.283
|
0.285
|
0.120
|
0.482
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006468
|
1.000
|
1.000
|
Hsc_gene_13803.t1
|
Hsc_gene_13803.t1;Hsc_gene_17501.t1
|
— |
Q22000.2 Probable 3',5'-cyclic-AMP phosphodiesterase pde-4 [Caenorhabditis elegans]
|
KAI3411753.1 putative 3',5'-cyclic phosphodiesterase pde-4, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004114|GO:0007165|GO:0008081
|
GO:0005575_0.845|GO:0110165_0.840|GO:0008150_0.790|GO:0009987_0.734|GO:0003674_0.698|GO:0065007_0.697|GO:0005622_0.692|GO:0050789_0.678|GO:0050794_0.667|GO:0050896_0.626|GO:0007154_0.555|GO:0023052_0.554|GO:0051716_0.551|GO:0003824_0.521|GO:0032501_0.517
|
IPR002073+558-889_636-875+|IPR003607+634-808_636-817+|IPR023088+632-645_663-676_677-692_704-720_790-803_807-823+|IPR023174+677-688+|IPR036971+561-923+|IPR040844+402-487+
|
SM00471+634-808+
|
PF00233+636-875+3'5'-cyclic_nucleotide_phosphodiesterase|PF18100+402-487+Phosphodiesterase_4_upstream_conserved_regions_(UCR)
|
G3DSA:1.10.1300.10:FF:000023+568-893+Phosphodiesterase
|
PTHR11347+427-914+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-260;364-433;484-530;876-952
|
4.000
|
1-37;261-363;434-483;531-875
|
4x0f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
104337.170
|
7.080
|
9.000
|
24.475
|
8.613
|
51.366
|
48.634
|
13.445
|
11.029
|
54.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1763.477
|
712.090
|
1675.657
|
574.216
|
182.383
|
247.109
|
144.542
|
1158.939
|
946.308
|
5244.878
|
3402.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.008
|
-0.448
|
-1.438
|
-1.686
|
0.452
|
-0.764
|
2.131
|
-2.864
|
-2.579
|
— |
-4.340
|
— | — |
No JSON data available for plots.