Hg_chrom1_TN10mRNA_2026
Organism: Heterodera glycines Gene Locus: chr1:17243429-17247480 Feature type: polypeptideProtein Sequence
Length: 585
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.232 | 1.057 | 0.884 | 1.339 | 0.57 | 0.59 | 0.684 | 1.595 | 1.224 | 1.373 | 1.508 | 1.852 | 0.526 | 0.837 | 0.977 | 0.673 | 0.829 | 1.315 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1944
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.124
|
— | — |
0.580
|
0.136
|
0.015
|
0.610
|
0.160
|
0.145
|
0.059
|
0.020
|
0.163
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.781|GO:0110165_0.770|GO:0005622_0.685|GO:0008150_0.683|GO:0005737_0.610|GO:0043226_0.568|GO:0009987_0.561|GO:0043229_0.549
|
IPR000210+10-118_19-97_19-128+|IPR002083+286-421_288-402_289-420_441-574_444-574_446-555+|IPR008974+277-431_434-582+|IPR011333+6-154_8-118+|IPR011705+132-242_135-238+
|
SM00061+288-402_446-555+|SM00225+19-128+|SM00875+132-242+
|
PF00651+10-118+BTB/POZ_domain|PF07707+135-238+BTB_And_C-terminal_Kelch|PF22486+289-420_444-574+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+154-259+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+11-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-585
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
66829.010
|
6.505
|
0.000
|
28.376
|
12.650
|
46.838
|
53.162
|
14.530
|
13.846
|
45.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
389.457
|
9.448
|
44.502
|
17.839
|
11.344
|
26.342
|
29.193
|
20.841
|
111.246
|
1560.626
|
939.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.010
|
0.778
|
-1.213
|
— |
1.234
|
— | — | — | — | — |
-6.535
|
— | — |
No JSON data available for plots.