Hg_chrom1_TN10mRNA_2028
Organism: Heterodera glycines Gene Locus: chr1:17253092-17254711 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 1.78 | 0.957 | 1.815 | 1.116 | 0.859 | 0.456 | 2.153 | 0.425 | 1.229 | 1.45 | 3.096 | 1.196 | 0.736 | 0.781 | 0.889 | 0.549 | 0.725 | 0.736 | 0.844 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1946
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKALESHFVCKKCKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.548
|
0.300
|
0.009
|
0.578
|
0.180
|
0.153
|
0.221
|
0.004
|
0.137
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003125
|
2.000
|
1.000
|
Hsc_gene_11077.t1
|
Hsc_gene_11077.t1;Hsc_gene_11087.t1;Hsc_gene_15109.t1;Hsc_gene_5995.t1
|
— | — |
EAW43651.1 Heat shock protein DnaJ-like protein [Nodularia spumigena CCY9414]
|
AIE97092
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001623+19-76_20-88_22-70_27-70+|IPR036869+7-78_21-71+
|
SM00271+19-76+
|
PF00226+22-70+DnaJ_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
23919.510
|
7.965
|
7.500
|
29.665
|
12.440
|
50.239
|
49.761
|
17.703
|
11.962
|
47.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
694.112
|
5.853
|
36.312
|
40.663
|
299.380
|
143.221
|
26.164
|
249.516
|
1.382
|
2735.286
|
1563.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.406
|
2.656
|
— |
2.847
|
-1.049
|
-2.442
|
0.690
|
-3.107
|
-11.184
|
5.209
|
— | — | — |
No JSON data available for plots.