Hg_chrom1_TN10mRNA_203
Organism: Heterodera glycines Gene Locus: chr1:1484888-1496458 Feature type: polypeptideProtein Sequence
Length: 673
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.76 | 1.935 | 0.865 | 0.871 | 1.09 | 1.753 | 0.442 | 1.337 | 1.849 | 0.924 | 1.036 | 0.612 | 1.816 | 0.714 | 0.819 | 0.785 | 0.999 | 0.81 | 0.914 | 0.787 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_3893
|
Hg_chrom1_TN10mRNA_203
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RAGKRKQ,KKCANTIKTCPECKVKVK
|
— | — | — | — |
1-21
|
0.978
|
1.000
|
0.000
|
0.000
|
0.656
|
0.095
|
0.010
|
0.448
|
0.070
|
0.180
|
0.060
|
0.004
|
0.174
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005606
|
1.000
|
1.000
|
Hsc_gene_3893.t1
|
Hsc_gene_3893.t1
|
— | — |
XP_007247550.3 E3 ubiquitin-protein ligase XIAP-like [Astyanax mexicanus]
|
MBN2641692
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0009987_0.899|GO:0065007_0.843|GO:0005575_0.842|GO:0110165_0.842|GO:0050789_0.830|GO:0050794_0.818|GO:0005622_0.763|GO:0050896_0.638|GO:0003674_0.626|GO:0008152_0.613|GO:0008219_0.605|GO:0012501_0.605|GO:0044238_0.603|GO:0043067_0.600|GO:0051716_0.599|GO:0043170_0.592|GO:0048518_0.574|GO:0005737_0.568|GO:0048519_0.566|GO:0019538_0.562|GO:0023052_0.562|GO:0007154_0.561|GO:0019222_0.558|GO:0048523_0.553|GO:0060255_0.549|GO:0007165_0.548|GO:0048583_0.538|GO:0009893_0.536|GO:0016020_0.536|GO:0010604_0.530|GO:0036211_0.526|GO:0043412_0.526|GO:0032502_0.514|GO:0043069_0.514|GO:0044237_0.511|GO:0043687_0.510|GO:0070647_0.510|GO:0016567_0.509|GO:0032446_0.509
|
IPR001841+626-661+|IPR013083+609-673+
|
— |
PF13920+624-666+Zinc_finger,_C3HC4_type_(RING_finger)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-673
|
4ic3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
77281.640
|
7.068
|
6.000
|
24.814
|
13.076
|
51.560
|
48.440
|
13.522
|
11.293
|
46.508
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1095.695
|
9.195
|
717.325
|
446.410
|
193.097
|
20.927
|
14.358
|
37.971
|
4237.721
|
1075.642
|
2430.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.054
|
5.462
|
-0.576
|
-1.239
|
-3.192
|
— | — |
-1.274
|
1.855
|
-3.071
|
— | — | — |