Hg_chrom1_TN10mRNA_2033
Organism: Heterodera glycines Gene Locus: chr1:17290461-17291395 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.263 | 1.051 | 0.822 | 1.169 | 0.377 | 0.869 | 0.605 | 1.412 | 1.255 | 1.374 | 1.455 | 2.326 | 2.04 | 1.521 | 1.268 | 1.13 | 0.648 | 1.027 | 1.304 | 0.166 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1951
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRSVRFATKMNKRILRK
|
46-68
|
0.998
|
37-76
|
0.997
|
— | — |
0.000
|
— | — |
0.805
|
0.106
|
0.024
|
0.324
|
0.083
|
0.048
|
0.047
|
0.016
|
0.143
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000051
|
1.000
|
22.000
|
Hsc_gene_11093.t1;Hsc_gene_12070.t1;Hsc_gene_12070.t2;Hsc_gene_1370.t1;Hsc_gene_13795.t1;Hsc_gene_14049.t1;Hsc_gene_14796.t1;Hsc_gene_15181.t1;Hsc_gene_1558.t1;Hsc_gene_16201.t1;Hsc_gene_16961.t1;Hsc_gene_17311.t2;Hsc_gene_19580.t1;Hsc_gene_2235.t1;Hsc_gene_23658.t1;Hsc_gene_25043.t1;Hsc_gene_25498.t1;Hsc_gene_25637.t1;Hsc_gene_3366.t1;Hsc_gene_3366.t2;Hsc_gene_3563.t1;Hsc_gene_3574.t1
|
— | — | — |
KAI3416240.1 hypothetical protein GPALN_005785 [Globodera pallida]
|
XP_023434921
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
20334.120
|
10.751
|
18.500
|
25.424
|
12.429
|
45.198
|
54.802
|
18.644
|
6.780
|
46.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
6.679
|
1.774
|
3.006
|
8.578
|
13.229
|
8.222
|
7.797
|
4.402
|
0.000
|
11.594
|
6.625
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.140
|
1.607
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.