Hg_chrom1_TN10mRNA_2041
Organism: Heterodera glycines Gene Locus: chr1:17331848-17337781 Feature type: polypeptideProtein Sequence
Length: 1,385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 1.041 | 1.142 | 1.095 | 1.035 | 1.222 | 0.877 | 1.841 | 0.834 | 1.307 | 0.339 | 0.722 | 1.043 | 1.222 | 1.916 | 0.444 | 0.722 | 1.017 | 1.0 | 0.977 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1959
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRKR,PELKRRY
|
— | — | — | — | — | — |
0.002
|
— | — |
0.741
|
0.461
|
0.052
|
0.564
|
0.153
|
0.108
|
0.057
|
0.024
|
0.147
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000492
|
5.000
|
2.000
|
Hsc_gene_15604.t1;Hsc_gene_8471.t1
|
— | — | — |
CAD2205395.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+873-1048+|IPR006172+894-907_1087-1099_1189-1197+|IPR023211+1147-1259+|IPR043502+871-1245+
|
— |
PF03175+873-1048+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+681-1353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-214;1339-1385
|
2.000
|
1-128;215-1338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
156433.120
|
6.954
|
13.500
|
27.798
|
12.058
|
44.549
|
55.451
|
15.307
|
12.491
|
50.686
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
145.889
|
0.760
|
1.734
|
1.011
|
2.966
|
11.810
|
6.287
|
16.927
|
0.000
|
622.705
|
355.832
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.009
|
— | — |
-1.287
|
-10.080
|
— |
-7.601
|
— | — |
No JSON data available for plots.