Hg_chrom1_TN10mRNA_2042
Organism: Heterodera glycines Gene Locus: chr1:17343526-17348329 Feature type: polypeptideProtein Sequence
Length: 787
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 1.566 | 1.201 | 0.482 | 0.932 | 0.684 | 0.605 | 1.207 | 2.005 | 1.391 | 1.174 | 0.822 | 1.553 | 1.051 | 1.271 | 0.98 | 0.75 | 0.501 | 2.541 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,KKNQIHFQWHRPKKKKKKL,PKAADKMNTKSRPKKKSKKKSAKRSGKRRKKNQIHFQWHRPKKKKKK
|
1-39
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.681
|
0.076
|
0.021
|
0.408
|
0.088
|
0.032
|
0.062
|
0.005
|
0.126
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000373
|
1.000
|
7.000
|
Hsc_gene_11049.t1;Hsc_gene_11049.t2;Hsc_gene_11090.t1;Hsc_gene_11090.t2;Hsc_gene_12065.t1;Hsc_gene_16417.t1;Hsc_gene_6114.t1
|
— | — | — |
KAI3411129.1 hypothetical protein GPALN_003212 [Globodera pallida]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
335-410;777-787
|
2.000
|
1-334;411-776
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
91367.980
|
9.288
|
23.500
|
28.590
|
12.961
|
49.428
|
50.572
|
16.391
|
12.198
|
44.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
516.621
|
483.439
|
727.381
|
523.725
|
472.293
|
382.850
|
189.652
|
945.996
|
450.111
|
525.631
|
493.265
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.359
|
— |
-0.365
|
-0.181
|
-0.288
|
-1.004
|
1.201
|
-2.177
|
— | — | — | — | — |
No JSON data available for plots.