Hg_chrom1_TN10mRNA_2049
Organism: Heterodera glycines Gene Locus: chr1:17405906-17407198 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.348 | 2.086 | 0.664 | 0.916 | 1.218 | 1.278 | 0.316 | 0.997 | 1.181 | 1.706 | 0.956 | 2.345 | 1.661 | 0.767 | 1.627 | 1.092 | 0.599 | 0.654 | 0.767 | 0.586 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1967
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.622
|
0.288
|
0.044
|
0.316
|
0.412
|
0.174
|
0.215
|
0.533
|
0.086
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000765
|
1.000
|
5.000
|
Hsc_gene_17769.t1;Hsc_gene_24035.t1;Hsc_gene_24035.t2;Hsc_gene_2966.t2;Hsc_gene_6082.t1
|
Hsc_gene_24035.t1;Hsc_gene_24035.t2
|
— |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAI4455847.1 zinc finger bed domain-containing protein 4 [Holotrichia oblita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.924|GO:0005622_0.880|GO:0016020_0.864|GO:0043226_0.850|GO:0043229_0.835|GO:0043227_0.811|GO:0043231_0.790|GO:0005737_0.789|GO:0005634_0.660|GO:0003674_0.645|GO:0005488_0.610|GO:0005515_0.600|GO:0031974_0.586|GO:0043233_0.583|GO:0070013_0.581|GO:0031981_0.579|GO:0005654_0.564|GO:0042802_0.505
|
IPR012337+12-213+|IPR052035+2-244+
|
— | — | — |
PTHR46481+2-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
35496.060
|
9.431
|
13.000
|
27.243
|
10.963
|
52.492
|
47.508
|
16.279
|
10.963
|
40.532
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
29.725
|
1.227
|
0.139
|
0.584
|
1.031
|
2.764
|
0.201
|
0.414
|
0.000
|
127.663
|
72.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-3.777
|
-2.846
|
— |
-7.788
|
— |
-6.418
|
— | — |
No JSON data available for plots.