Hg_chrom1_TN10mRNA_206
Organism: Heterodera glycines Gene Locus: chr1:1504600-1510054 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.008 | 1.21 | 0.42 | 0.266 | 0.642 | 0.889 | 0.895 | 0.674 | 2.098 | 1.432 | 0.584 | 2.493 | 2.087 | 0.852 | 0.826 | 1.239 | 0.569 | 1.022 | 1.186 | 0.68 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_201
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_206
|
29-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
7-39
|
0.978
|
— | — |
0.000
|
— | — |
0.079
|
0.233
|
0.009
|
0.135
|
0.233
|
0.403
|
0.258
|
0.008
|
0.747
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002890
|
2.000
|
1.000
|
Hsc_gene_3895.t1
|
Hsc_gene_3895.t1
|
— |
O44827.2 Facilitated glucose transporter protein 1 [Caenorhabditis elegans]
|
KAF7635598.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.924|GO:0005575_0.873|GO:0110165_0.872|GO:0009987_0.837|GO:0016020_0.828|GO:0071944_0.816|GO:0005886_0.796|GO:0006810_0.780|GO:0051179_0.780|GO:0051234_0.780|GO:0055085_0.740|GO:0003674_0.692|GO:0005215_0.661|GO:0022857_0.661|GO:0008643_0.570|GO:0034219_0.570|GO:0005622_0.569|GO:0015749_0.561|GO:0008645_0.560|GO:0043226_0.550|GO:0043229_0.540|GO:1904659_0.520|GO:0005737_0.519
|
IPR003663+29-485_44-54_144-163_302-312_391-412_414-426+|IPR005828+36-487+|IPR005829+149-174_346-362+|IPR020846+36-478+|IPR036259+24-492_37-486+|IPR045263+28-507+
|
— |
PF00083+36-487+Sugar_(and_other)_transporter
|
G3DSA:1.20.1250.20:FF:001511+18-495+Solute_carrier_family_2,_facilitated_glucose_transporter_member_5
|
PTHR23503+28-507+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-519
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
57292.330
|
9.625
|
12.500
|
15.414
|
12.717
|
36.224
|
63.776
|
9.249
|
6.166
|
47.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1001.309
|
445.120
|
278.064
|
418.576
|
926.534
|
1064.096
|
974.299
|
550.717
|
152.165
|
2520.075
|
1505.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.910
|
-0.226
|
0.700
|
1.115
|
— | — |
-1.048
|
0.960
|
-4.161
|
— | — | — | — |
No JSON data available for plots.