Hg_chrom1_TN10mRNA_2061
Organism: Heterodera glycines Gene Locus: chr1:17475761-17476595 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 0.999 | 0.781 | 0.635 | 1.227 | 2.045 | 1.169 | 0.613 | 1.5 | 1.326 | 0.0 | 1.083 | 1.704 | 1.652 | 1.252 | 0.526 | 0.402 | 1.208 | 1.416 | 0.722 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1979
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.657
|
0.073
|
0.737
|
0.073
|
0.189
|
0.084
|
0.063
|
0.108
|
0.318
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002878
|
2.000
|
1.000
|
Hsc_gene_12069.t2
|
Hsc_gene_12069.t2;Hsc_gene_12069.t3
|
— |
P34308.4 Calpain clp-1 [Caenorhabditis elegans]
|
KAK6011276.1 calpain family cysteine protease, partial [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.785|GO:0005575_0.725|GO:0110165_0.706|GO:0003674_0.685|GO:0009987_0.636|GO:0005622_0.544|GO:0005737_0.516|GO:0016020_0.515
|
IPR000169+101-112+|IPR001300+53-140_54-140+|IPR022684+38-61_77-99_101-117+|IPR038765+39-141+|IPR050420+40-143+
|
— |
PF00648+54-140+Calpain_family_cysteine_protease
|
— |
PTHR10183+40-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
1ziv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
18242.800
|
4.279
|
-8.000
|
19.018
|
11.656
|
37.423
|
62.577
|
7.362
|
11.656
|
48.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
white
|
6.696
|
4.394
|
4.174
|
1.365
|
0.972
|
55.861
|
8.910
|
2.446
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.826
|
-1.498
|
— |
5.835
|
-2.640
|
-4.606
|
1.997
|
— | — | — | — | — |
No JSON data available for plots.