Hg_chrom1_TN10mRNA_2065
Organism: Heterodera glycines Gene Locus: chr1:17502623-17503929 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.812 | 1.191 | 0.301 | 1.674 | 1.12 | 0.416 | 1.31 | 0.582 | 1.416 | 1.059 | 1.541 | 0.97 | 0.84 | 1.871 | 0.998 | 0.859 | 0.595 | 0.672 | 1.284 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1983
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.547
|
0.229
|
0.022
|
0.522
|
0.069
|
0.082
|
0.093
|
0.016
|
0.076
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q02356.2 AMP deaminase 2 [Rattus norvegicus]
|
KAI6231693.1 AMP deaminase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003876|GO:0032264
|
GO:0008150_0.825|GO:0003674_0.770|GO:0009987_0.671|GO:0005575_0.625|GO:0110165_0.617|GO:0003824_0.606|GO:0005622_0.599|GO:0008152_0.592|GO:0016787_0.575|GO:0044238_0.571|GO:0044237_0.559|GO:0016810_0.552|GO:0003876_0.548|GO:0016814_0.548|GO:0019239_0.548|GO:0047623_0.548|GO:0006139_0.540|GO:0005737_0.508
|
IPR006329+34-229_49-229+|IPR032466+46-229+
|
— |
PF19326+49-229+AMP_deaminase
|
— |
PTHR11359+34-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;227-229
|
1.000
|
40-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
26766.150
|
7.054
|
2.000
|
35.371
|
11.354
|
55.459
|
44.541
|
18.777
|
16.594
|
42.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
120.412
|
135.457
|
18.966
|
5.808
|
6.278
|
4.228
|
1.413
|
4.438
|
81.886
|
399.165
|
263.189
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.067
|
-4.680
|
-1.593
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.