Hg_chrom1_TN10mRNA_2066
Organism: Heterodera glycines Gene Locus: chr1:17507292-17509049 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.249 | 1.052 | 0.57 | 1.171 | 0.636 | 0.59 | 1.653 | 0.826 | 1.675 | 0.939 | 2.674 | 1.263 | 1.033 | 0.506 | 1.299 | 0.542 | 0.877 | 0.636 | 1.58 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1984
|
— | — |
0.667
|
1.000
|
— |
1.000
|
— |
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.413
|
0.121
|
0.035
|
0.642
|
0.317
|
0.050
|
0.145
|
0.004
|
0.102
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003132
|
1.000
|
2.000
|
Hsc_gene_14157.t1;Hsc_gene_14157.t2
|
— | — |
Q02356.2 AMP deaminase 2 [Rattus norvegicus]
|
KAJ1369471.1 AMP deaminase 2 [Parelaphostrongylus tenuis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003876|GO:0009168|GO:0019239|GO:0032264
|
GO:0008150_0.807|GO:0003674_0.768|GO:0005575_0.635|GO:0110165_0.634|GO:0009987_0.611|GO:0003824_0.606|GO:0005622_0.592|GO:0008152_0.565|GO:0016787_0.555|GO:0005737_0.548|GO:0044238_0.541|GO:0016810_0.525|GO:0044237_0.523|GO:0016814_0.520|GO:0019239_0.520|GO:0003876_0.507|GO:0047623_0.507
|
IPR006329+8-65_9-65_66-232+|IPR006650+140-146+|IPR032466+11-231+
|
— |
PF19326+9-65_66-232+AMP_deaminase
|
— |
PTHR11359+8-65+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
8hub_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
27469.430
|
5.117
|
-6.000
|
24.793
|
14.050
|
45.041
|
54.959
|
11.983
|
12.810
|
47.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
31.233
|
248.556
|
32.589
|
13.324
|
7.710
|
10.084
|
8.324
|
9.876
|
15.454
|
1.129
|
7.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.158
|
-4.360
|
-1.183
|
-0.824
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.