Hg_chrom1_TN10mRNA_2068
Organism: Heterodera glycines Gene Locus: chr1:17518749-17545655 Feature type: polypeptideProtein Sequence
Length: 1,279
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 0.927 | 1.137 | 0.189 | 0.834 | 1.042 | 0.735 | 1.955 | 1.042 | 1.236 | 0.628 | 1.334 | 0.956 | 1.308 | 1.372 | 1.184 | 0.974 | 0.877 | 1.083 | 0.736 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1986
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_12075
|
— |
17-Not_Clustered
|
0.685
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RRRR,KGPPR,PRKRP,RRYLRSYHEMMRPLPRRER,RSKAAKERAKKMANKRKRRRKA
|
— | — | — | — |
1-25
|
0.989
|
1.000
|
1.000
|
0.000
|
0.287
|
0.117
|
0.030
|
0.250
|
0.532
|
0.331
|
0.355
|
0.053
|
0.408
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001749
|
1.000
|
3.000
|
Hsc_gene_12072.t1;Hsc_gene_12072.t2;Hsc_gene_16472.t1
|
Hsc_gene_12072.t1;Hsc_gene_12072.t2;Hsc_gene_12075.t1;Hsc_gene_16472.t1
|
— |
Q09499.2 Serine/threonine-protein kinase/endoribonuclease ire-1 [Caenorhabditis elegans]
|
KAI6171996.1 Non-specific serine/threonine protein kinase [Aphelenchoides besseyi];KAI6194168.1 Non-specific serine/threonine protein kinase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004521|GO:0004540|GO:0004672|GO:0004674|GO:0005515|GO:0005524|GO:0006397|GO:0006468|GO:0030968
|
GO:0008150_0.949|GO:0005575_0.897|GO:0110165_0.893|GO:0009987_0.886|GO:0065007_0.827|GO:0050789_0.807|GO:0050896_0.803|GO:0050794_0.792|GO:0005622_0.779|GO:0051716_0.743|GO:0016020_0.689|GO:0071944_0.687|GO:0005886_0.660|GO:0003674_0.658|GO:0007154_0.629|GO:0023052_0.628|GO:0008152_0.615|GO:0006950_0.608|GO:0007165_0.605|GO:0005737_0.587|GO:0043226_0.581|GO:0043170_0.578|GO:0044237_0.578|GO:0043229_0.565|GO:0033554_0.548|GO:0044238_0.548|GO:0003824_0.532|GO:0043227_0.523|GO:0043231_0.517|GO:0034976_0.516
|
IPR000719+591-852_593-852+|IPR008271+710-722+|IPR010513+855-982_858-977+|IPR011009+590-853+|IPR011047+45-258+|IPR015943+23-266+|IPR018391+46-77_126-158_209-241+|IPR038357+856-988+|IPR045133+586-964+
|
SM00220+591-852+|SM00564+46-77_126-158_209-241+|SM00580+913-967+
|
PF00069+593-852+Protein_kinase_domain|PF06479+858-977+Ribonuclease_2-5A
|
G3DSA:3.30.200.20:FF:000077+582-669+Putative_Serine/threonine-protein_kinase/endoribonuclease_IRE1
|
PTHR13954+586-964+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
327-450;991-1279
|
2.000
|
1-326;451-990
|
6xdf_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
141967.330
|
7.371
|
20.000
|
26.036
|
11.259
|
48.319
|
51.681
|
14.777
|
11.259
|
52.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1913.183
|
1224.054
|
2108.120
|
1465.663
|
1524.654
|
1865.544
|
1525.721
|
1375.214
|
3719.545
|
1422.152
|
2406.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
0.123
|
-0.417
|
— |
0.306
|
-0.281
|
-0.544
|
0.291
|
— | — | — | — | — |