Hg_chrom1_TN10mRNA_2069
Organism: Heterodera glycines Gene Locus: chr1:17528109-17541745 Feature type: polypeptideProtein Sequence
Length: 1,154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.987 | 0.835 | 1.016 | 1.083 | 1.533 | 0.897 | 1.43 | 0.732 | 0.785 | 0.84 | 1.376 | 0.915 | 1.05 | 1.45 | 1.337 | 0.881 | 0.827 | 0.867 | 0.968 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1987
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRKRR,KTRKSNGRRRKNGRG,KKGGPHAMSAFRRLSR,KKKQQQLQHVASIQKKRST
|
— | — | — | — | — | — |
0.000
|
— | — |
0.110
|
0.069
|
0.029
|
0.214
|
0.247
|
0.226
|
0.260
|
0.009
|
0.846
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006476
|
1.000
|
1.000
|
Hsc_gene_12074.t1
|
Hsc_gene_12073.t1;Hsc_gene_12074.t1
|
— |
Q09274.3 Degenerin-like protein unc-105 [Caenorhabditis elegans]
|
KAI1711914.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.974|GO:0005575_0.882|GO:0110165_0.880|GO:0009987_0.856|GO:0016020_0.789|GO:0003674_0.693|GO:0051179_0.679|GO:0006810_0.661|GO:0051234_0.661|GO:0071944_0.658|GO:0005886_0.634|GO:0050896_0.575|GO:0055085_0.575|GO:0006811_0.571|GO:0034220_0.568|GO:0006812_0.558|GO:0030001_0.542
|
IPR001873+223-953_233-356_252-269_291-307_502-936_646-657_661-677_690-708_714-732_744-760_777-788_788-805_843-863_883-903_903-917_917-933+|IPR020903+777-797+
|
— |
PF00858+233-356_502-936+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+223-953+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-186;461-530;956-1154
|
2.000
|
187-460;531-955
|
7yvc_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
128382.830
|
8.464
|
34.500
|
26.603
|
10.572
|
51.560
|
48.440
|
15.511
|
11.092
|
52.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.