Hg_chrom1_TN10mRNA_2074
Organism: Heterodera glycines Gene Locus: chr1:17580889-17581855 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.159 | 1.229 | 0.368 | 1.305 | 0.73 | 0.254 | 0.712 | 1.898 | 1.779 | 0.971 | 0.419 | 1.285 | 0.821 | 1.235 | 1.779 | 0.583 | 0.539 | 1.095 | 0.628 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1992
|
— | — |
1.778
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.783
|
0.142
|
0.085
|
0.369
|
0.170
|
0.165
|
0.101
|
0.110
|
0.064
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000517
|
5.000
|
2.000
|
Hsc_gene_15174.t1;Hsc_gene_22790.t1
|
— | — | — |
KIH53449.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.935|GO:0110165_0.928|GO:0005622_0.889|GO:0043226_0.842|GO:0043229_0.830|GO:0016020_0.735|GO:0005737_0.684|GO:0043227_0.672|GO:0043231_0.653|GO:0003674_0.588|GO:0005488_0.548|GO:0005515_0.548
|
IPR008906+193-273+|IPR012337+1-272+|IPR052035+1-275+
|
— |
PF05699+193-273+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+1-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
32056.520
|
5.263
|
-4.000
|
28.470
|
9.609
|
52.313
|
47.687
|
13.879
|
14.591
|
44.840
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.688
|
0.000
|
1.285
|
0.382
|
0.852
|
0.257
|
0.000
|
0.839
|
0.000
|
1.656
|
0.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.697
|
— | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.