Hg_chrom1_TN10mRNA_2079
Organism: Heterodera glycines Gene Locus: chr1:17603300-17603694 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 0.979 | 0.574 | 1.089 | 1.93 | 0.81 | 0.752 | 1.053 | 0.936 | 1.28 | 1.435 | 1.858 | 1.462 | 1.012 | 1.074 | 0.902 | 0.173 | 0.638 | 1.619 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1997
|
— | — |
1.889
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.398
|
0.023
|
0.566
|
0.130
|
0.301
|
0.110
|
0.147
|
0.249
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003133
|
2.000
|
1.000
|
Hsc_gene_12076.t1
|
Hsc_gene_12076.t1
|
— |
Q6T308.1 1,4-alpha-glucan-branching enzyme [Felis catus]
|
KAI1727964.1 alpha amylase, catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.845|GO:0008150_0.838|GO:0110165_0.838|GO:0005622_0.710|GO:0005737_0.650|GO:0009987_0.600|GO:0008152_0.555|GO:0044238_0.549
|
IPR013783+58-93+
|
— | — | — |
PTHR43651+6-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-95
|
4bzy_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
11042.700
|
7.106
|
1.000
|
31.579
|
13.684
|
46.316
|
53.684
|
16.842
|
14.737
|
40.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
39.630
|
47.901
|
42.684
|
52.373
|
69.181
|
74.272
|
87.358
|
22.588
|
2.056
|
23.203
|
14.140
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.396
|
— |
0.405
|
— | — | — |
-1.824
|
2.093
|
— |
4.770
|
— | — | — |
No JSON data available for plots.