Hg_chrom1_TN10mRNA_2086
Organism: Heterodera glycines Gene Locus: chr1:17630753-17632475 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.494 | 1.581 | 1.545 | 0.586 | 1.133 | 0.436 | 0.371 | 1.558 | 1.637 | 1.416 | 0.73 | 1.166 | 1.495 | 1.09 | 1.445 | 0.85 | 0.697 | 0.816 | 2.833 | 0.583 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2004
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.537
|
0.320
|
0.042
|
0.513
|
0.147
|
0.071
|
0.086
|
0.024
|
0.317
|
0.221
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000008
|
59.000
|
13.000
|
Hsc_gene_11034.t1;Hsc_gene_12617.t1;Hsc_gene_14779.t1;Hsc_gene_16431.t1;Hsc_gene_17790.t1;Hsc_gene_20442.t1;Hsc_gene_20467.t1;Hsc_gene_20494.t1;Hsc_gene_25465.t1;Hsc_gene_26541.t1;Hsc_gene_3010.t1;Hsc_gene_3536.t1;Hsc_gene_9380.t1
|
— | — | — |
KAI3411074.1 hypothetical protein GPALN_003159 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
336-353
|
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
41559.330
|
5.441
|
-6.500
|
30.312
|
14.164
|
49.008
|
50.992
|
15.014
|
15.297
|
45.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
29.422
|
5.674
|
7.830
|
18.225
|
46.490
|
20.634
|
19.557
|
28.141
|
0.000
|
73.766
|
42.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.547
|
1.323
|
1.320
|
-1.159
|
— | — | — | — |
5.045
|
— | — | — |
No JSON data available for plots.