Hg_chrom1_TN10mRNA_2088
Organism: Heterodera glycines Gene Locus: chr1:17640893-17648132 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.132 | 0.929 | 0.839 | 1.095 | 1.31 | 0.753 | 1.338 | 0.919 | 1.184 | 0.664 | 2.576 | 1.149 | 0.655 | 1.092 | 1.251 | 0.838 | 0.958 | 0.561 | 0.787 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2006
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PSAKRTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.922
|
0.167
|
0.002
|
0.368
|
0.102
|
0.035
|
0.026
|
0.009
|
0.045
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006478
|
1.000
|
1.000
|
Hsc_gene_23811.t1
|
Hsc_gene_23811.t1
|
— |
P34568.2 Speckle-type POZ protein homolog [Caenorhabditis elegans]
|
KAI3411769.1 Protein CBR-bath-44 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.893|GO:0005575_0.842|GO:0110165_0.782|GO:0005622_0.680|GO:0009987_0.645|GO:0003674_0.577|GO:0016020_0.573|GO:0043226_0.549|GO:0043229_0.537|GO:0005488_0.521|GO:0008152_0.513
|
IPR000210+210-315_217-289_217-319+|IPR008974+23-181+|IPR011333+186-319_200-315+
|
SM00225+217-319+
|
PF00651+210-315+BTB/POZ_domain
|
— |
PTHR24413+13-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-411
|
4j8z_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
45628.800
|
6.130
|
-2.500
|
24.088
|
10.219
|
47.932
|
52.068
|
12.409
|
11.679
|
51.095
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
1248.063
|
1133.818
|
873.914
|
1217.594
|
1488.797
|
1391.314
|
3193.901
|
819.497
|
734.626
|
1114.745
|
951.837
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.605
|
— |
0.587
|
0.258
|
— |
1.209
|
-0.868
|
2.104
|
— | — | — | — | — |
No JSON data available for plots.