Hg_chrom1_TN10mRNA_2090
Organism: Heterodera glycines Gene Locus: chr1:17652625-17654328 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 1.169 | 1.395 | 0.73 | 0.661 | 1.085 | 0.409 | 0.926 | 1.822 | 1.609 | 0.722 | 1.089 | 2.131 | 1.221 | 1.296 | 0.983 | 0.607 | 0.802 | 1.628 | 0.389 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKRRRPHKK,RRFDFYVDEHFKTRKWKL
|
20-71
|
0.887
|
— | — | — | — |
0.000
|
— | — |
0.499
|
0.344
|
0.094
|
0.446
|
0.430
|
0.134
|
0.207
|
0.006
|
0.132
|
0.258
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000021
|
31.000
|
9.000
|
Hsc_gene_12092.t1;Hsc_gene_13746.t1;Hsc_gene_1386.t1;Hsc_gene_16433.t1;Hsc_gene_20441.t1;Hsc_gene_20629.t1;Hsc_gene_23777.t1;Hsc_gene_2877.t1;Hsc_gene_7671.t1
|
— | — | — |
KAI3411121.1 hypothetical protein GPALN_003204 [Globodera pallida]
|
HEX8516173
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-378
|
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
43599.490
|
6.817
|
1.500
|
24.603
|
12.963
|
44.444
|
55.556
|
12.963
|
11.640
|
45.767
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
245.100
|
2.199
|
5.923
|
11.604
|
64.148
|
149.599
|
30.122
|
136.690
|
0.000
|
922.206
|
526.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.258
|
1.081
|
2.439
|
1.234
|
-2.304
|
— |
-2.038
|
-8.712
|
4.393
|
— | — | — |
No JSON data available for plots.