Hg_chrom1_TN10mRNA_2094
Organism: Heterodera glycines Gene Locus: chr1:17682822-17683684 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.346 | 1.346 | 0.67 | 1.27 | 0.263 | 0.405 | 0.815 | 0.526 | 0.936 | 1.565 | 1.116 | 0.929 | 1.17 | 0.607 | 0.215 | 1.278 | 1.381 | 1.037 | 1.215 | 1.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2012
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.216
|
0.803
|
0.518
|
0.208
|
0.245
|
0.064
|
0.041
|
0.061
|
0.183
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000191
|
7.000
|
4.000
|
Hsc_gene_10633.t1;Hsc_gene_10640.t1;Hsc_gene_10723.t2;Hsc_gene_10724.t2
|
Hsc_gene_10633.t1;Hsc_gene_10633.t2;Hsc_gene_23976.t1
|
— | — |
KAH7727707.1 TspO/MBR family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.936|GO:0005575_0.905|GO:0110165_0.905|GO:0009987_0.865|GO:0051179_0.764|GO:0006810_0.763|GO:0051234_0.763|GO:0016020_0.643|GO:0003674_0.604|GO:0071944_0.598|GO:0005886_0.568|GO:0005622_0.566|GO:0043226_0.554|GO:0043227_0.527
|
IPR004307+4-164_18-160+|IPR038330+8-167+
|
— |
PF03073+18-160+TspO/MBR_family
|
— |
PTHR10057+4-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
188-190
|
1.000
|
1-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
20384.600
|
8.756
|
7.000
|
14.737
|
12.105
|
39.474
|
60.526
|
9.474
|
5.263
|
58.947
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
391.486
|
45.271
|
87.998
|
205.048
|
651.830
|
512.995
|
740.172
|
240.566
|
0.000
|
781.296
|
446.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
2.042
|
1.329
|
1.638
|
-0.331
|
0.538
|
-1.205
|
1.766
|
-10.421
|
8.537
|
— | — | — |
No JSON data available for plots.