SCN Proteipedia

Hg_chrom1_TN10mRNA_2095

Organism: Heterodera glycines Gene Locus: chr1:17684554-17688087 Feature type: polypeptide

Protein Sequence

Length: 832

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.713	1.034	1.158	0.622	1.703	1.233	0.529	1.202	1.015	1.251	1.074	1.343	1.469	0.717	1.472	1.03	0.611	0.856	0.462	0.813	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2013	—	—	1.444	1.000	1.000	1.000	2.000	2.000	2.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.926

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRLREKDVECRGLRK,KRQPNIPKREKAKIK	—	—	—	—	—	—	0.000	—	—	0.938	0.043	0.039	0.291	0.020	0.062	0.028	0.025	0.039	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003135	1.000	2.000	Hsc_gene_10633.t2;Hsc_gene_10633.t3	Hsc_gene_10632.t1;Hsc_gene_10632.t2;Hsc_gene_10633.t2;Hsc_gene_10633.t3	—	Q62141.2 Paired amphipathic helix protein Sin3b [Mus musculus]	KAI3413787.1 Paired amphipathic helix protein Sin3b [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003714\|GO:0006355	GO:0008150_0.953\|GO:0009987_0.913\|GO:0005575_0.847\|GO:0110165_0.847\|GO:0005622_0.817\|GO:0065007_0.814\|GO:0050789_0.797\|GO:0050794_0.778\|GO:0016020_0.769\|GO:0043226_0.764\|GO:0008152_0.758\|GO:0043229_0.751\|GO:0043170_0.733\|GO:0044237_0.732\|GO:0009058_0.728\|GO:0044249_0.720\|GO:0009059_0.708\|GO:0043227_0.706\|GO:0019222_0.701\|GO:0031323_0.701\|GO:0010467_0.699\|GO:0060255_0.694\|GO:0044238_0.692\|GO:0043231_0.686\|GO:0009889_0.677\|GO:0031326_0.677\|GO:0010468_0.673\|GO:0010556_0.673\|GO:0003674_0.669\|GO:0048519_0.650\|GO:0006139_0.641\|GO:0048523_0.638\|GO:0090304_0.629\|GO:0005488_0.628\|GO:0034654_0.626\|GO:0016070_0.620\|GO:0141187_0.620\|GO:0032774_0.612\|GO:0009892_0.608\|GO:0005634_0.606\|GO:0031324_0.605\|GO:0010605_0.603\|GO:0009890_0.598\|GO:0031327_0.598\|GO:0010558_0.597\|GO:0006351_0.593\|GO:0080090_0.583\|GO:0019219_0.557\|GO:0051252_0.553\|GO:0043228_0.552\|GO:0043232_0.552\|GO:0006355_0.547\|GO:2001141_0.547\|GO:0005515_0.540\|GO:0045934_0.535\|GO:0051253_0.535\|GO:0045892_0.534\|GO:1902679_0.534\|GO:0071840_0.527\|GO:0016043_0.520\|GO:0050896_0.519	IPR003822+23-66+\|IPR013194+98-199_101-195+\|IPR031693+484-751+\|IPR036600+3-69_11-67+\|IPR039774+7-827+	SM00761+98-199+	PF02671+23-66+Paired_amphipathic_helix_repeat\|PF08295+101-195+Sin3_family_co-repressor\|PF16879+484-751+C-terminal_domain_of_Sin3a_protein	—	PTHR12346+7-827+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	381-456	2.000	1-380;457-832	2n2h_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.550	96093.640	5.796	-9.000	33.293	11.058	53.486	46.514	16.707	16.587	43.510

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	grey	419.976	492.308	329.667	301.809	361.791	446.856	1004.885	468.404	291.136	341.897	320.142

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.808	-0.843	—	0.229	0.319	1.181	—	1.244	—	—	—	—	—

No JSON data available for plots.

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