Hg_chrom1_TN10mRNA_2096
Organism: Heterodera glycines Gene Locus: chr1:17689598-17695716 Feature type: polypeptideProtein Sequence
Length: 1,365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.039 | 0.972 | 0.48 | 1.441 | 2.01 | 0.532 | 1.648 | 1.074 | 1.089 | 1.043 | 1.293 | 1.323 | 0.902 | 1.241 | 1.109 | 0.733 | 0.91 | 0.451 | 0.733 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2014
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRLREKDVECRGLRK,KRQPNIPKREKAKIK,KRQFGKEQANLNAKKAKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.913
|
0.059
|
0.009
|
0.303
|
0.022
|
0.064
|
0.033
|
0.015
|
0.068
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003136
|
1.000
|
2.000
|
Hsc_gene_10632.t1;Hsc_gene_10632.t2
|
Hsc_gene_10632.t1;Hsc_gene_10632.t2;Hsc_gene_10633.t2;Hsc_gene_10633.t3
|
— |
Q60520.3 Paired amphipathic helix protein Sin3a [Mus musculus]
|
KAI3413787.1 Paired amphipathic helix protein Sin3b [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003714|GO:0006355
|
GO:0008150_0.948|GO:0009987_0.912|GO:0005575_0.863|GO:0110165_0.859|GO:0065007_0.842|GO:0005622_0.833|GO:0050789_0.819|GO:0050794_0.813|GO:0016020_0.785|GO:0043226_0.784|GO:0043229_0.767|GO:0008152_0.752|GO:0043170_0.746|GO:0044237_0.733|GO:0009058_0.730|GO:0019222_0.727|GO:0043227_0.727|GO:0044249_0.723|GO:0031323_0.720|GO:0009059_0.717|GO:0010467_0.707|GO:0060255_0.706|GO:0043231_0.693|GO:0009889_0.691|GO:0031326_0.691|GO:0010556_0.688|GO:0010468_0.686|GO:0044238_0.681|GO:0048519_0.671|GO:0003674_0.663|GO:0048523_0.662|GO:0006139_0.640|GO:0005488_0.632|GO:0090304_0.627|GO:0034654_0.626|GO:0141187_0.621|GO:0009892_0.619|GO:0016070_0.616|GO:0010605_0.615|GO:0031324_0.615|GO:0005634_0.611|GO:0032774_0.611|GO:0009890_0.608|GO:0031327_0.608|GO:0010558_0.607|GO:0080090_0.603|GO:0006351_0.591|GO:0019219_0.563|GO:0043228_0.563|GO:0043232_0.563|GO:0051252_0.558|GO:0006355_0.552|GO:2001141_0.552|GO:0005515_0.548|GO:0071840_0.539|GO:0016043_0.534|GO:0045934_0.533|GO:0051253_0.533|GO:0045892_0.531|GO:1902679_0.531|GO:0050896_0.530
|
IPR003822+138-208_161-205_321-395_344-392_508-551+|IPR013194+583-684_586-680+|IPR031693+969-1234+|IPR036600+136-207_144-206_320-397_323-394_489-554_496-552+|IPR039774+136-1312+
|
SM00761+583-684+
|
PF02671+161-205_344-392_508-551+Paired_amphipathic_helix_repeat|PF08295+586-680+Sin3_family_co-repressor|PF16879+969-1234+C-terminal_domain_of_Sin3a_protein
|
G3DSA:1.20.1160.11:FF:000001+144-206+Paired_amphipathic_helix_protein_Sin3
|
PTHR12346+136-1312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-123;280-330;390-459;866-941
|
4.000
|
124-279;331-389;460-865;942-1365
|
8w9f_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
156690.700
|
6.832
|
8.500
|
30.256
|
11.136
|
54.799
|
45.201
|
16.264
|
13.993
|
44.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
1586.131
|
1570.417
|
992.620
|
751.854
|
854.941
|
1231.852
|
1922.185
|
1054.374
|
1760.150
|
2477.369
|
2169.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.892
|
-1.200
|
-0.292
|
— |
0.541
|
0.652
|
-0.331
|
1.009
|
— | — | — | — | — |
No JSON data available for plots.