Hg_chrom1_TN10mRNA_2097
Organism: Heterodera glycines Gene Locus: chr1:17696745-17698339 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.246 | 1.474 | 1.024 | 0.243 | 1.291 | 0.903 | 1.09 | 0.704 | 1.408 | 0.952 | 0.747 | 2.071 | 0.587 | 1.219 | 1.725 | 1.107 | 0.924 | 0.96 | 1.625 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.466
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.585
|
0.149
|
0.011
|
0.593
|
0.245
|
0.123
|
0.228
|
0.033
|
0.166
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006479
|
1.000
|
1.000
|
Hsc_gene_10631.t1
|
Hsc_gene_10631.t1
|
— |
O45495.1 Ubiquitin-conjugating enzyme E2 variant 1 [Caenorhabditis elegans]
|
KAI3413788.1 Ubiquitin-conjugating enzyme E2 variant 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.911|GO:0008152_0.728|GO:0044238_0.717|GO:0043170_0.714|GO:0009987_0.695|GO:0005575_0.649|GO:0110165_0.607|GO:0005622_0.566|GO:0050896_0.552|GO:0003674_0.530|GO:0019538_0.520|GO:0051716_0.506
|
IPR000608+8-142_13-133+|IPR016135+1-142_6-136+
|
SM00212+11-136+
|
PF00179+13-133+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000026+3-142+Ubiquitin-conjugating_enzyme_E2_variant
|
PTHR24068+37-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-142
|
1.000
|
1-122
|
6d6i_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
16122.190
|
7.167
|
1.000
|
28.169
|
8.451
|
51.408
|
48.592
|
14.789
|
13.380
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
1205.111
|
728.358
|
822.225
|
1069.915
|
1342.384
|
1207.353
|
1316.016
|
1098.241
|
1048.259
|
1641.982
|
1387.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.418
|
0.488
|
0.295
|
— | — | — |
0.404
|
— | — | — | — | — |
No JSON data available for plots.