Hg_chrom1_TN10mRNA_2098
Organism: Heterodera glycines Gene Locus: chr1:17698474-17699112 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 0.769 | 0.751 | 0.0 | 2.204 | 1.483 | 0.394 | 0.826 | 0.551 | 1.34 | 1.377 | 2.917 | 0.459 | 1.589 | 0.843 | 0.354 | 0.813 | 1.377 | 1.271 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2016
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.762
|
0.090
|
0.009
|
0.478
|
0.085
|
0.214
|
0.144
|
0.009
|
0.045
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006480
|
1.000
|
1.000
|
Hsc_gene_10630.t1
|
Hsc_gene_10630.t1
|
— |
P62869.1 Elongin-B [Mus musculus]
|
KAI1714233.1 elongin-B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006368|GO:0030891|GO:0070449
|
GO:0005575_0.923|GO:0110165_0.917|GO:0005622_0.873|GO:0005737_0.812|GO:0032991_0.699|GO:0008150_0.689|GO:0016020_0.649|GO:0009987_0.636|GO:0065007_0.621|GO:0050789_0.611|GO:0043226_0.610|GO:0003674_0.609|GO:0005488_0.609|GO:0043229_0.592|GO:0005515_0.590|GO:0050794_0.586|GO:1902494_0.571|GO:0043227_0.565|GO:0140535_0.561|GO:1990234_0.551|GO:0000151_0.540|GO:0043231_0.538|GO:0048518_0.530|GO:0008152_0.528|GO:0048522_0.522|GO:0043170_0.519|GO:0044237_0.514|GO:0044238_0.511|GO:0009058_0.510|GO:0009059_0.509|GO:0010467_0.509|GO:0044249_0.509|GO:0019222_0.508|GO:0031323_0.501|GO:0060255_0.501
|
IPR029071+1-100+|IPR039049+1-116+
|
— | — | — |
PTHR13248+1-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-121
|
1.000
|
1-70
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
13823.940
|
4.838
|
-4.000
|
32.231
|
6.612
|
48.760
|
51.240
|
14.876
|
17.355
|
43.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.359
|
0.149
|
0.571
|
0.491
|
0.000
|
0.128
|
0.304
|
0.134
|
1.205
|
0.000
|
0.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.