Hg_chrom1_TN10mRNA_2100
Organism: Heterodera glycines Gene Locus: chr1:17701299-17704575 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.927 | 0.886 | 1.324 | 1.403 | 0.909 | 0.58 | 1.034 | 0.919 | 1.317 | 0.94 | 1.216 | 1.559 | 0.767 | 1.658 | 1.076 | 0.823 | 0.783 | 0.909 | 0.434 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2018
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKR,KIRKKKRRRKK
|
52-73
|
0.999
|
63-98
|
0.993
|
— | — |
0.000
|
— | — |
0.879
|
0.090
|
0.013
|
0.289
|
0.056
|
0.057
|
0.063
|
0.029
|
0.062
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006482
|
1.000
|
1.000
|
Hsc_gene_10627.t1
|
Hsc_gene_10627.t1
|
— |
Q18674.2 Ribosomal RNA processing protein 1 homolog [Caenorhabditis elegans]
|
KAI1723758.1 nucleolar protein,Nop52 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006281|GO:0030915
|
GO:0008150_0.964|GO:0005575_0.928|GO:0009987_0.925|GO:0110165_0.925|GO:0065007_0.898|GO:0050789_0.887|GO:0003674_0.870|GO:0050794_0.867|GO:0016020_0.850|GO:0005622_0.844|GO:0050896_0.833|GO:0005488_0.817|GO:0043226_0.786|GO:0005515_0.777|GO:0008152_0.776|GO:0043170_0.776|GO:0048518_0.772|GO:0043229_0.768|GO:0044238_0.764|GO:0009058_0.759|GO:0048522_0.757|GO:0019222_0.751|GO:0044237_0.750|GO:0044249_0.747|GO:0009059_0.746|GO:0031323_0.744|GO:0043227_0.738|GO:0060255_0.738|GO:0010467_0.735|GO:0080090_0.732|GO:0006139_0.727|GO:0005737_0.722|GO:0009889_0.722|GO:0031326_0.720|GO:0090304_0.719|GO:0009893_0.718|GO:0034654_0.718|GO:0010468_0.715|GO:0010556_0.715|GO:0043231_0.714|GO:0016070_0.712|GO:0141187_0.711|GO:0031325_0.709|GO:0032774_0.709|GO:0010604_0.708|GO:0009891_0.700|GO:0031328_0.700|GO:0008219_0.699|GO:0009605_0.699|GO:0012501_0.699|GO:0006915_0.695|GO:0010557_0.695|GO:0019219_0.695|GO:0043067_0.695|GO:0097159_0.695|GO:0044419_0.694|GO:0051252_0.694|GO:0006351_0.693|GO:0042981_0.693|GO:0006355_0.690|GO:2001141_0.690|GO:0009607_0.689|GO:0043207_0.689|GO:0051707_0.689|GO:0006366_0.685|GO:0045935_0.685|GO:0051254_0.684|GO:0006357_0.683|GO:0045893_0.681|GO:1902680_0.681|GO:0045944_0.677|GO:0003676_0.676|GO:0043068_0.676|GO:0009615_0.674|GO:0016032_0.674|GO:0043065_0.674|GO:0019080_0.670|GO:0019083_0.670|GO:0043923_0.670|GO:0044403_0.670|GO:0051702_0.670|GO:0051851_0.670|GO:0098586_0.670|GO:0003723_0.663|GO:0060090_0.660|GO:0030674_0.658|GO:0140110_0.658|GO:0003712_0.654|GO:0003713_0.650|GO:0043228_0.628|GO:0043232_0.628|GO:0005634_0.625|GO:0031974_0.593|GO:0031981_0.593|GO:0043233_0.593|GO:0070013_0.593|GO:0005829_0.587|GO:0005654_0.574|GO:0005694_0.554|GO:0005730_0.547|GO:0001652_0.540
|
IPR011513+339-633_344-532+|IPR036388+438-562+
|
— |
PF07574+344-532+Nse1_non-SMC_component_of_SMC5-6_complex
|
— |
PTHR20973+339-633+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
625-677
|
1.000
|
1-624
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
76856.930
|
8.022
|
14.000
|
29.690
|
10.340
|
49.778
|
50.222
|
16.396
|
13.294
|
47.415
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
2431.731
|
3358.567
|
2612.902
|
2590.248
|
2484.760
|
2112.651
|
2193.552
|
2511.494
|
1782.406
|
2602.951
|
2251.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.592
|
-0.512
|
0.096
|
-0.092
|
-0.219
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.