Hg_chrom1_TN10mRNA_2101
Organism: Heterodera glycines Gene Locus: chr1:17704609-17705576 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.951 | 1.014 | 1.026 | 0.743 | 0.763 | 0.752 | 0.372 | 1.652 | 1.256 | 0.789 | 1.749 | 2.272 | 0.643 | 1.897 | 1.168 | 0.853 | 0.563 | 0.286 | 0.656 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2019
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.689
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRTSIEIFIVALMSRDRRG
|
18-39
|
0.997
|
6-46
|
0.998
|
— | — |
0.000
|
— | — |
0.217
|
0.247
|
0.313
|
0.506
|
0.050
|
0.040
|
0.079
|
0.029
|
0.050
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_10626.t1
|
— | — |
KAI3413794.1 Molybdopterin synthase catalytic subunit [Globodera pallida]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0005575_0.912|GO:0110165_0.910|GO:0009987_0.864|GO:0003674_0.836|GO:0005622_0.829|GO:0005737_0.774|GO:0008152_0.774|GO:0044238_0.754|GO:0044237_0.751|GO:0003824_0.717|GO:0006139_0.711|GO:0044281_0.697|GO:0006793_0.689|GO:0006796_0.689|GO:0019637_0.684|GO:0006753_0.679|GO:0055086_0.679|GO:0016740_0.678|GO:0009117_0.676|GO:0072521_0.675|GO:0006163_0.674|GO:0019362_0.670|GO:0019674_0.670|GO:0046496_0.670|GO:0072524_0.670|GO:0016772_0.656|GO:0016301_0.650|GO:0016773_0.650|GO:0050262_0.650|GO:0061769_0.650|GO:0005829_0.591
|
IPR027417+40-195_45-181+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
30505.330
|
9.809
|
13.000
|
25.279
|
11.524
|
45.725
|
54.275
|
15.242
|
10.037
|
46.840
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
336.474
|
564.222
|
583.211
|
443.921
|
362.175
|
311.123
|
450.560
|
649.042
|
219.298
|
46.007
|
120.275
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.181
|
-0.483
|
-0.286
|
-0.325
|
— |
0.545
|
0.956
|
-0.383
|
— | — | — | — | — |
No JSON data available for plots.