SCN Proteipedia

Hg_chrom1_TN10mRNA_2114

Organism: Heterodera glycines Gene Locus: chr1:17761478-17767967 Feature type: polypeptide

Protein Sequence

Length: 650

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.252	1.038	0.923	0.531	0.974	1.42	0.952	1.385	1.197	1.102	0.956	1.81	1.368	0.621	1.13	0.747	0.933	0.909	0.473	0.543	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2032	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.546

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	5-25	0.987	—	—	—	—	0.000	—	—	0.143	0.861	0.018	0.208	0.031	0.124	0.090	0.109	0.122	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003138	2.000	1.000	Hsc_gene_23770.t1	Hsc_gene_23770.t1	—	P45953.1 Very long-chain specific acyl-CoA dehydrogenase, mitochondrial [Rattus norvegicus]	KAI1719984.1 acyl-CoA dehydrogenase, middle domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003995\|GO:0016627\|GO:0050660	GO:0005575_0.812\|GO:0110165_0.797\|GO:0005622_0.731\|GO:0003674_0.712\|GO:0016020_0.699\|GO:0008150_0.683\|GO:0005737_0.680\|GO:0043226_0.618\|GO:0003824_0.610\|GO:0009987_0.609\|GO:0043229_0.608\|GO:0043227_0.583\|GO:0043231_0.563\|GO:0008152_0.526\|GO:0044238_0.514\|GO:0016491_0.506	IPR006089+217-229_436-455+\|IPR006091+215-316+\|IPR009075+328-474+\|IPR009100+90-341+\|IPR013786+103-211+\|IPR036250+326-474+\|IPR037069+95-213+\|IPR046373+214-327+\|IPR049448+522-639+	—	PF00441+328-474+Acyl-CoA_dehydrogenase,_C-terminal_domain\|PF02770+215-316+Acyl-CoA_dehydrogenase,_middle_domain\|PF02771+103-211+Acyl-CoA_dehydrogenase,_N-terminal_domain\|PF21343+522-639+ACAD9/ACADV,_C-terminal_domain	G3DSA:1.10.540.10:FF:000001+96-213+Very_long-chain-specific_acyl-CoA_dehydrogenase,_mitochondrial\|G3DSA:1.20.140.10:FF:000008+328-474+acyl-CoA_dehydrogenase_family_member_9,_mitochondrial\|G3DSA:2.40.110.10:FF:000006+214-327+very_long-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial	PTHR43884+78-483+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-74;643-650	1.000	75-642	2z1q_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.711	71565.740	8.469	15.000	25.538	10.154	46.462	53.538	14.615	10.923	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	2734.529	1865.772	3964.244	2058.052	2161.043	3220.643	2149.486	5219.315	1645.965	2989.635	2413.776

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.860	—	-0.839	—	0.590	-0.574	0.594	-1.139	—	—	—	—	—

No JSON data available for plots.

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