Hg_chrom1_TN10mRNA_2115
Organism: Heterodera glycines Gene Locus: chr1:17769467-17781280 Feature type: polypeptideProtein Sequence
Length: 1,478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.149 | 1.18 | 0.849 | 0.583 | 0.44 | 2.307 | 1.055 | 2.267 | 0.662 | 0.914 | 0.379 | 1.075 | 0.564 | 1.015 | 1.022 | 1.682 | 1.32 | 0.953 | 0.312 | 0.219 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2033
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
SSRKR,PADKRSR,RRALCCVLSNPDQKGKMRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.817
|
0.118
|
0.013
|
0.375
|
0.070
|
0.048
|
0.040
|
0.020
|
0.105
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003139
|
1.000
|
2.000
|
Hsc_gene_23771.t1;Hsc_gene_23771.t2
|
Hsc_gene_16973.t1;Hsc_gene_16973.t2;Hsc_gene_16973.t3;Hsc_gene_23771.t1
|
— |
P14057.1 Nuclear factor 1 [Sus scrofa]
|
KAH7727438.1 nuclear factor I [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0005634|GO:0006355
|
GO:0008150_0.972|GO:0009987_0.924|GO:0065007_0.911|GO:0050789_0.906|GO:0050794_0.898|GO:0003674_0.813|GO:0008152_0.807|GO:0019222_0.807|GO:0031323_0.807|GO:0044237_0.807|GO:0048518_0.800|GO:0044238_0.797|GO:0080090_0.797|GO:0043170_0.793|GO:0060255_0.790|GO:0048522_0.789|GO:0005488_0.788|GO:0009058_0.773|GO:0009889_0.772|GO:0009059_0.771|GO:0010467_0.771|GO:0010468_0.771|GO:0010556_0.771|GO:0031326_0.771|GO:0044249_0.771|GO:0006139_0.760|GO:0009893_0.758|GO:0016070_0.757|GO:0032774_0.757|GO:0034654_0.757|GO:0090304_0.757|GO:0141187_0.757|GO:0019219_0.751|GO:0051252_0.751|GO:0010604_0.748|GO:0031325_0.746|GO:0006351_0.743|GO:0009891_0.741|GO:0006355_0.740|GO:2001141_0.740|GO:0031328_0.735|GO:0010557_0.728|GO:0045935_0.723|GO:0051254_0.723|GO:1902680_0.714|GO:0045893_0.711|GO:0005575_0.710|GO:0110165_0.704|GO:0097159_0.682|GO:0003676_0.666|GO:0006357_0.652|GO:0006366_0.652|GO:0045944_0.630|GO:0003677_0.627|GO:0016020_0.616|GO:0005622_0.604|GO:0043226_0.557|GO:0043229_0.540|GO:0032502_0.539|GO:0048856_0.539|GO:0032501_0.504|GO:0048519_0.501
|
IPR000647+91-845+|IPR003619+154-266_156-261+|IPR019548+97-132+|IPR020604+88-285+
|
SM00523+154-266+
|
PF03165+156-261+MH1_domain|PF10524+97-132+Nuclear_factor_I_protein_pre-N-terminus
|
— |
PTHR11492+91-845+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-101;327-1119;1229-1478
|
2.000
|
102-326;1120-1228
|
9qky_N
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
155654.560
|
7.883
|
36.500
|
19.350
|
7.713
|
53.248
|
46.752
|
12.043
|
7.307
|
61.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2133.546
|
9944.715
|
1287.207
|
871.780
|
934.397
|
2182.732
|
1585.652
|
958.178
|
1229.177
|
1750.635
|
1527.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.180
|
-3.649
|
-0.454
|
— |
1.239
|
-0.452
|
-1.292
|
0.868
|
— | — | — | — | — |
No JSON data available for plots.