Hg_chrom1_TN10mRNA_2136
Organism: Heterodera glycines Gene Locus: chr1:17879499-17880717 Feature type: polypeptideProtein Sequence
Length: 85
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.0 | 0.428 | 0.0 | 1.176 | 2.112 | 0.56 | 1.765 | 0.784 | 1.113 | 2.852 | 1.384 | 0.654 | 0.452 | 3.121 | 0.504 | 0.386 | 1.248 | 0.0 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2053
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRIGQHTRAKRKRDE,RRVQELLKISKDKKALK,KRKRDEMQQVLVAQRKAHK,ISKDKKALKFLKKRIGQHTRAKRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.525
|
0.412
|
0.060
|
0.460
|
0.168
|
0.038
|
0.092
|
0.006
|
0.052
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006483
|
1.000
|
1.000
|
Hsc_gene_25433.t1
|
Hsc_gene_25433.t1
|
— |
P49181.3 Large ribosomal subunit protein eL36 [Caenorhabditis elegans]
|
KAI3411775.1 60S ribosomal protein L36 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.893|GO:0110165_0.890|GO:0005622_0.852|GO:0043226_0.781|GO:0043229_0.781|GO:0005737_0.706|GO:0043228_0.691|GO:0043232_0.691|GO:0005829_0.636|GO:0005840_0.636|GO:0022626_0.636|GO:0032991_0.614|GO:0003674_0.605|GO:1990904_0.563|GO:0016020_0.562|GO:0044391_0.553|GO:0003735_0.542|GO:0005198_0.542|GO:0015934_0.530|GO:0022625_0.520|GO:0043227_0.506
|
IPR000509+2-84_3-82+|IPR038097+10-83+
|
— |
PF01158+3-82+Ribosomal_protein_L36e
|
G3DSA:1.10.10.1760:FF:000001+1-85+60S_ribosomal_protein_L36
|
PTHR10114+2-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-85
|
0.000
|
— |
9cai_Ci
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
10199.160
|
12.109
|
22.500
|
47.059
|
7.059
|
61.176
|
38.824
|
37.647
|
9.412
|
29.412
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
9711.010
|
6246.848
|
8693.609
|
11046.734
|
12694.531
|
10668.693
|
7541.116
|
5547.264
|
16249.644
|
6883.885
|
10897.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.247
|
0.685
|
0.455
|
0.168
|
-0.235
|
-0.490
|
-1.050
|
0.587
|
— | — | — | — | — |
No JSON data available for plots.